Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene Hugo Value Type description Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 23 to 72 of 66312 in total 
Filtered: 1

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\def\wcB{0.1\textwidth}
\def\wcC{0.1\textwidth}
\def\wcD{0.1\textwidth}
\def\wcE{0.1\textwidth}
\def\wcF{0.1\textwidth}
\def\wcG{0.1\textwidth}
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\begin{longtable}{|c|c|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Network Comparison Type\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
Interaction Map\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{10}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
2\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
CDK4\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
cell division protein kinase 4 (ec 2.7.1.37) (cyclin-dependent kinase 4) (psk-j3). [source:swissprot;acc:p11802]\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
48.9847\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcH}{\vspace{3pt}\noindent
23.3131\vspace{3pt}}}&\parbox{\wcI}{\vspace{3pt}\noindent
2.10117\vspace{3pt}}\\\cline{5-5}\cline{9-9}
&&&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&&&\parbox{\wcI}{\vspace{3pt}\noindent
25.6716\vspace{3pt}}\\\cline{2-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
HBS1L\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
hbs1-like. [source:refseq;acc:nm\_006620]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
215\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
322\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
107\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
LAMP1\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
lysosome-associated membrane glycoprotein 1 precursor (lamp-1) (cd107a antigen). [source:swissprot;acc:p11279]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
223\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
330\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.47982\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
MRPS17\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
28s ribosomal protein s17, mitochondrial precursor (mrp-s17) (hspc011). [source:swissprot;acc:q9y2r5]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
21185\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
28492\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
7307\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
PSCD1\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
cytohesin 1 (sec7 homolog b2-1). [source:swissprot;acc:q15438]\vspace{3pt}}&&\multirow{5}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
41482.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
33356.5\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
8126\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-9}
&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
RHOBTB2\vspace{3pt}}}&&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
rho-related btb domain-containing protein 2 (deleted in breast cancer 2 gene protein) (p83). [source:swissprot;acc:q9byz6]\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
450.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2394.5\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
5.31521\vspace{3pt}}\\\cline{3-3}\cline{7-9}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&&&\parbox{\wcG}{\vspace{3pt}\noindent
48.0356\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1357.07\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
28.2513\vspace{3pt}}\\\cline{3-3}\cline{7-9}
&&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&&&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
21.225\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcH}{\vspace{3pt}\noindent
48.9336\vspace{3pt}}}&\parbox{\wcI}{\vspace{3pt}\noindent
2.30547\vspace{3pt}}\\\cline{5-5}\cline{9-9}
&&&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&&&\parbox{\wcI}{\vspace{3pt}\noindent
27.7086\vspace{3pt}}\\\cline{1-4}\cline{6-9}
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
3\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
BEST4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
vitelliform macular dystrophy 2-like protein 2. [source:refseq;acc:nm\_153274]\vspace{3pt}}&&\multirow{7}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
333506\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
475045\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
141539\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
CDK4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
cell division protein kinase 4 (ec 2.7.1.37) (cyclin-dependent kinase 4) (psk-j3). [source:swissprot;acc:p11802]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
223\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
330\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.47982\vspace{3pt}}\\\cline{2-4}\cline{7-9}
&\multirow{5}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
CDK6\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
cell division protein kinase 6 (ec 2.7.1.37) (serine/threonine protein kinase plstire). [source:swissprot;acc:q00534]\vspace{3pt}}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
2399.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
543.5\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
4.4149\vspace{3pt}}\\\cline{3-3}\cline{5-5}\cline{7-9}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
223\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
330\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
107\vspace{3pt}}\\\cline{3-3}\cline{5-5}\cline{7-9}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
1362.75\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
69.9153\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
19.4914\vspace{3pt}}\\\cline{3-3}\cline{7-9}
&&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&&&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
48.9847\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcH}{\vspace{3pt}\noindent
23.3131\vspace{3pt}}}&\parbox{\wcI}{\vspace{3pt}\noindent
2.10117\vspace{3pt}}\\\cline{5-5}\cline{9-9}
&&&&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&&&\parbox{\wcI}{\vspace{3pt}\noindent
25.6716\vspace{3pt}}\\\cline{2-9}
&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
HLX\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
homeobox protein hlx1 (homeobox protein hb24). [source:swissprot;acc:q14774]\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\multirow{8}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
2597.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
698.5\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
3.71868\vspace{3pt}}\\\cline{3-3}\cline{7-9}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&&&\parbox{\wcG}{\vspace{3pt}\noindent
1596.92\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
115.48\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
13.8285\vspace{3pt}}\\\cline{3-3}\cline{7-9}
&&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&&&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
50.9657\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcH}{\vspace{3pt}\noindent
26.4292\vspace{3pt}}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.92839\vspace{3pt}}\\\cline{5-5}\cline{9-9}
&&&&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&&&\parbox{\wcI}{\vspace{3pt}\noindent
24.5365\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
PSCD1\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
cytohesin 1 (sec7 homolog b2-1). [source:swissprot;acc:q15438]\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
15\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
28\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.86667\vspace{3pt}}\\\cline{3-3}\cline{5-5}\cline{7-9}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\multirow{6}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
407289\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
263351\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
143938\vspace{3pt}}\\\cline{2-4}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
PSCD2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
cytohesin 2 (arf nucleotide-binding site opener) (arno protein) (arf exchange factor). [source:swissprot;acc:q99418]\vspace{3pt}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
41482.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
33356.5\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
8126\vspace{3pt}}\\\cline{2-4}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
RINT1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
rad50-interacting protein 1. [source:refseq;acc:nm\_021930]\vspace{3pt}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
337\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
232\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
105\vspace{3pt}}\\\cline{2-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
SLC25A43\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
mitochondrial solute carrier protein. [source:refseq;acc:nm\_145305]\vspace{3pt}}&&\multirow{4}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
21185\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
28492\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
7307\vspace{3pt}}\\\cline{1-4}\cline{7-9}
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
4\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
nuclear dna-binding protein; small unique nuclear receptor corepressor; c1d dna-binding protein. [source:refseq;acc:nm\_006333]\vspace{3pt}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
332411\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
473408\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
140997\vspace{3pt}}\\\cline{2-4}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
BEST1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
bestrophin (vitelliform macular dystrophy protein) (tu15b). [source:swissprot;acc:o76090]\vspace{3pt}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
36474.3\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
43509.4\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
7035.1\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
CDK6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
cell division protein kinase 6 (ec 2.7.1.37) (serine/threonine protein kinase plstire). [source:swissprot;acc:q00534]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
223\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
330\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.47982\vspace{3pt}}\\\cline{2-4}\cline{6-9}
&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
HBS1L\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
hbs1-like. [source:refseq;acc:nm\_006620]\vspace{3pt}}}&&\multirow{4}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
2597.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
698.5\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
3.71868\vspace{3pt}}\\\cline{3-3}\cline{7-9}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&&&\parbox{\wcG}{\vspace{3pt}\noindent
1596.92\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
115.48\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
13.8285\vspace{3pt}}\\\cline{3-3}\cline{7-9}
&&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&&&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
50.9657\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcH}{\vspace{3pt}\noindent
26.4292\vspace{3pt}}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.92839\vspace{3pt}}\\\cline{5-5}\cline{9-9}
&&&&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&&&\parbox{\wcI}{\vspace{3pt}\noindent
24.5365\vspace{3pt}}\\\cline{2-9}
&\multirow{5}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
LAMP2\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
lysosome-associated membrane glycoprotein 2 precursor (lamp-2) (cd107b antigen). [source:swissprot;acc:p13473]\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
2399.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
543.5\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
4.4149\vspace{3pt}}\\\cline{3-3}\cline{5-5}\cline{7-9}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
223\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
330\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
107\vspace{3pt}}\\\cline{3-3}\cline{5-5}\cline{7-9}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
1362.75\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
69.9153\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
19.4914\vspace{3pt}}\\\cline{3-3}\cline{7-9}
&&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&&&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
48.9847\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcH}{\vspace{3pt}\noindent
23.3131\vspace{3pt}}}&\parbox{\wcI}{\vspace{3pt}\noindent
2.10117\vspace{3pt}}\\\cline{5-5}\cline{9-9}
&&&&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&&&\parbox{\wcI}{\vspace{3pt}\noindent
25.6716\vspace{3pt}}\\\cline{2-9}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
PSCD2\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
cytohesin 2 (arf nucleotide-binding site opener) (arno protein) (arf exchange factor). [source:swissprot;acc:q99418]\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
15\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
28\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.86667\vspace{3pt}}\\\cline{3-3}\cline{5-5}\cline{7-9}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\multirow{6}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
407289\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
263351\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
143938\vspace{3pt}}\\\cline{2-4}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
PSCD4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
cytohesin 4. [source:swissprot;acc:q9uia0]\vspace{3pt}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
41482.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
33356.5\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
8126\vspace{3pt}}\\\cline{2-4}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
RHOBTB2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
rho-related btb domain-containing protein 2 (deleted in breast cancer 2 gene protein) (p83). [source:swissprot;acc:q9byz6]\vspace{3pt}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
337\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
232\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
105\vspace{3pt}}\\\cline{1-4}\cline{6-9}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
5\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
BEST2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
vitelliform macular dystrophy 2-like protein 1. [source:refseq;acc:nm\_017682]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
332411\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
473408\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
140997\vspace{3pt}}\\\cline{2-4}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
BEST4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
vitelliform macular dystrophy 2-like protein 2. [source:refseq;acc:nm\_153274]\vspace{3pt}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
36469.3\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
43503.3\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
7034\vspace{3pt}}\\\cline{2-4}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
CPD\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
carboxypeptidase d precursor (ec 3.4.17.-) (gp180). [source:swissprot;acc:o75976]\vspace{3pt}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
202.235\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
178.965\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
23.27\vspace{3pt}}\\\cline{2-9}
&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
JPH3\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
junctophilin 3 (junctophilin type 3) (jp-3). [source:swissprot;acc:q8wxh2]\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
1153.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
339.5\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
3.39764\vspace{3pt}}\\\cline{3-3}\cline{7-9}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&&&\parbox{\wcG}{\vspace{3pt}\noindent
314.926\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
27.2805\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
11.544\vspace{3pt}}\\\cline{3-3}\cline{7-9}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&&&\parbox{\wcG}{\vspace{3pt}\noindent
33.9632\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
18.4255\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.84327\vspace{3pt}}\\\cline{2-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
LAMP2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
lysosome-associated membrane glycoprotein 2 precursor (lamp-2) (cd107b antigen). [source:swissprot;acc:p13473]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
223\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
330\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.47982\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
MRPS17\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
28s ribosomal protein s17, mitochondrial precursor (mrp-s17) (hspc011). [source:swissprot;acc:q9y2r5]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
145.551\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
168.796\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
23.245\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Hugo is the HGNC identifier if it exists

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/