Scientific
MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis
These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.
MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.
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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene Hugo description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX
Showing element 2151 to 2200 of 12912 in total
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.125\textwidth}
\def\wcB{0.125\textwidth}
\def\wcC{0.125\textwidth}
\def\wcD{0.125\textwidth}
\def\wcE{0.125\textwidth}
\def\wcF{0.125\textwidth}
\def\wcG{0.125\textwidth}
\begin{longtable}{|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
538\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
POLR2L\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dna-directed rna polymerase ii 7.6 kda polypeptide (ec 2.7.7.6) (rpb10) (rpb7.6) (rpabc5). [source:swissprot;acc:p52436]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
237.627\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
253.604\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06724\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
PTPRB\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein-tyrosine phosphatase beta precursor (ec 3.1.3.48) (r-ptp- beta). [source:swissprot;acc:p23467]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
10603.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
12069.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13825\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
539\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
HOXC9\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein hox-c9 (hox-3b). [source:swissprot;acc:p31274]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
66.0818\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
71.6537\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.08432\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
MEMO1P\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein cgi-27 (c21orf19-like protein). [source:swissprot;acc:q9y316]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
236.964\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
252.86\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06708\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
PRSS16\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
thymus-specific serine protease precursor (ec 3.4.-.-). [source:swissprot;acc:q9nqe7]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
10603.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
12069.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13825\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
WRNIP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
werner helicase interacting protein isoform 1; putative helicase ruvbl; werner helicase interacting protein. [source:refseq;acc:nm\_020135]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
20613.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
24595.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.19322\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
540\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ASL\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
argininosuccinate lyase (ec 4.3.2.1) (arginosuccinase) (asal). [source:swissprot;acc:p04424]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
26048.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
31057.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.19229\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
CCDC47\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
gk001 protein. [source:refseq;acc:nm\_020198]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
10603.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
12069.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13825\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
GABRG3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
gamma-aminobutyric-acid receptor gamma-3 subunit precursor (gaba(a) receptor). [source:swissprot;acc:q99928]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
66.082\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
71.6526\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.0843\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
SEPHS2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
selenide,water dikinase 2 (ec 2.7.9.3) (selenophosphate synthetase 2) (selenium donor protein 2). [source:swissprot;acc:q99611]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
222.156\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
208.201\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06703\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
541\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
CLSTN2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
calsyntenin-2 precursor. [source:swissprot;acc:q9h4d0]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
10600.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
12065.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13819\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
COPB1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
coatomer beta subunit (beta-coat protein) (beta-cop). [source:swissprot;acc:p53618]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
53774.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
45105.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.1922\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
FOXG1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
forkhead box protein g1c (forkhead-related protein fkhl3) (hfk3) (fragment). [source:swissprot;acc:q14488]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
66.082\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
71.6526\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.0843\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
MICAL2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
flavoprotein oxidoreductase mical2. [source:refseq;acc:nm\_014632]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
222.156\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
208.201\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06703\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
542\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
AKT1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rac-alpha serine/threonine kinase (ec 2.7.1.-) (rac-pk-alpha) (protein kinase b) (pkb) (c-akt). [source:swissprot;acc:p31749]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
3889.27\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4426.74\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13819\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
GABRG1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
gamma-aminobutyric-acid receptor gamma-1 subunit precursor (gaba(a) receptor). [source:swissprot;acc:q8n1c3]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
66.082\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
71.6526\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.0843\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
INPP4B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
inositol polyphosphate-4-phosphatase, type ii, 105kd; inositol polyphosphate 4-phosphatase ii; 4-phosphatase ii. [source:refseq;acc:nm\_003866]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
222.156\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
208.201\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06703\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
MAT1A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
s-adenosylmethionine synthetase alpha and beta forms (ec 2.5.1.6) (methionine adenosyltransferase) (adomet synthetase) (mat-i/iii). [source:swissprot;acc:q00266]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
26084.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
31084.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.19169\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
543\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
CLSTN3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
calsyntenin-3 precursor. [source:swissprot;acc:q9bqt9]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
10599.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
12064.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13819\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
CNDP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
glutamate carboxypeptidase-like protein 2 precursor. [source:swissprot;acc:q96kn2]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
26612.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
31709\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.19151\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
GABRA2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
gamma-aminobutyric-acid receptor alpha-2 subunit precursor (gaba(a) receptor). [source:swissprot;acc:p47869]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
66.082\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
71.6525\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.0843\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
SEPHS1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
selenide,water dikinase 1 (ec 2.7.9.3) (selenophosphate synthetase 1) (selenium donor protein 1). [source:swissprot;acc:p49903]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
222.156\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
208.201\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06703\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
544\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
AKT3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rac-gamma serine/threonine protein kinase (ec 2.7.1.-) (rac-pk-gamma) (protein kinase akt-3) (protein kinase b, gamma) (pkb gamma) (stk-2). [source:swissprot;acc:q9y243]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
3889.27\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4426.74\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13819\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
GABRA6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
gamma-aminobutyric-acid receptor alpha-6 subunit precursor (gaba(a) receptor). [source:swissprot;acc:q16445]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
66.082\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
71.6525\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.0843\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
INPP4A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
inositol polyphosphate-4-phosphatase, type 1 isoform b; inositol polyphosphate-4-phosphatase, type i, 107kd; 4-phosphatase i; inositol polyphosphate-4-phosphatase i. [source:refseq;acc:nm\_001566]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
222.156\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
208.201\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06703\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
IPO11\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ran binding protein 11. [source:refseq;acc:nm\_016338]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
26018.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
30994.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.19121\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
545\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
AKT2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rac-beta serine/threonine protein kinase (ec 2.7.1.-) (rac-pk-beta) (protein kinase akt-2) (protein kinase b, beta) (pkb beta). [source:swissprot;acc:p31751]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
3889.27\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4426.74\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13819\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
EIF6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
eukaryotic translation initiation factor 6 (eif-6) (b4 integrin interactor) (cab) (p27(bbp)) (b(2)gcn homolog). [source:swissprot;acc:p56537]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
248.866\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
233.287\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06678\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
FAM57A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
membrane protein expressed in epithelial-like lung adenocarcinoma. [source:refseq;acc:nm\_024792]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
26010\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
30981.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.19115\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
GABRG2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
gamma-aminobutyric-acid receptor gamma-2 subunit precursor (gaba(a) receptor). [source:swissprot;acc:p18507]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
66.082\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
71.6526\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
1.0843\vspace{3pt}}}\\\cline{1-3}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
546\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
interleukin-1 receptor-associated kinase 4; interleukin-1 receptor associated kinase 4. [source:refseq;acc:nm\_016123]\vspace{3pt}}&&&&\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
ATP5D\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
atp synthase delta chain, mitochondrial precursor (ec 3.6.3.14). [source:swissprot;acc:p30049]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27162.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
32347.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.19089\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
WAS\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
wiskott-aldrich syndrome protein (wasp). [source:swissprot;acc:p42768]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
207.222\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
194.262\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06671\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
ZNF593\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
zinc finger protein t86. [source:swissprot;acc:o00488]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4052.77\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4612.54\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13812\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
547\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
CRK\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
proto-oncogene c-crk (p38) (adapter molecule crk). [source:swissprot;acc:p46108]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
207.26\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
194.346\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06645\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
GABRA4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
gamma-aminobutyric-acid receptor alpha-4 subunit precursor (gaba(a) receptor). [source:swissprot;acc:p48169]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
66.082\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
71.6525\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.0843\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
MAT2A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
s-adenosylmethionine synthetase gamma form (ec 2.5.1.6) (methionine adenosyltransferase) (adomet synthetase) (mat-ii). [source:swissprot;acc:p31153]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
25945.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
30892.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.19067\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
WRNIP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
werner helicase interacting protein isoform 1; putative helicase ruvbl; werner helicase interacting protein. [source:refseq;acc:nm\_020135]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5291.92\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
6020.19\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13762\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
548\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ABL2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
tyrosine-protein kinase abl2 (ec 2.7.1.112) (tyrosine kinase arg). [source:swissprot;acc:p42684]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
207.26\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
194.346\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06645\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
FDX1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
adrenodoxin, mitochondrial precursor (adrenal ferredoxin) (hepatoredoxin) (ferredoxin 1). [source:swissprot;acc:p10109]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8268.19\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
9405.85\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13759\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
GABRE\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
gamma-aminobutyric-acid receptor epsilon subunit precursor (gaba(a) receptor). [source:swissprot;acc:p78334]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
66.082\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
71.6525\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.0843\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
VAMP2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
vesicle-associated membrane protein 2 (vamp-2) (synaptobrevin 2). [source:swissprot;acc:p19065]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27516.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
32720\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.18912\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
549\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
proto-oncogene tyrosine-protein kinase src (ec 2.7.1.112) (p60-src) (c-src). [source:swissprot;acc:p12931]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
207.26\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
194.346\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06645\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
DPM1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dolichol-phosphate mannosyltransferase (ec 2.4.1.83) (dolichol- phosphate mannose synthase) (dolichyl-phosphate beta-d- mannosyltransferase) (mannose-p-dolichol synthase) (mpd synthase) (dpm synthase). [source:swissprot;acc:o60762]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5865.79\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
6671.23\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13731\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
JMJD6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
phosphatidylserine receptor; phosphatidylserine receptor beta. [source:refseq;acc:nm\_015167]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
66.082\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
71.6526\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.0843\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
VAMP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
vesicle-associated membrane protein 1 (vamp-1) (synaptobrevin 1). [source:swissprot;acc:p23763]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27516.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
32720\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.18912\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
550\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
GABRA1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
gamma-aminobutyric-acid receptor alpha-1 subunit precursor (gaba(a) receptor). [source:swissprot;acc:p14867]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
66.082\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
71.6525\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.0843\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
HCK\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
tyrosine-protein kinase hck (ec 2.7.1.112) (p59-hck/p60-hck) (hemopoietic cell kinase). [source:swissprot;acc:p08631]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
207.26\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
194.346\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06645\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
PHB\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
prohibitin. [source:swissprot;acc:p35232]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5773.45\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
6563.69\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13687\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
VAMP4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
vesicule-associated membrane protein 4 (vamp-4). [source:swissprot;acc:o75379]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27516.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
32720\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.18912\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Hugo is the HGNC identifier if it exists

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/