Scientific

MK5 Microarray Data


Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 2030 to 2079 of 3228 in total
Value Type: Measured
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1
\def\wcA{0.16666666666667\textwidth} \def\wcB{0.16666666666667\textwidth} \def\wcC{0.16666666666667\textwidth} \def\wcD{0.16666666666667\textwidth} \def\wcE{0.16666666666667\textwidth} \begin{longtable}{|c|c|c|c|c|} \hline \parbox{\wcA}{\vspace{3pt}\noindent Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent network\_comparison\vspace{3pt}}\\ \hline \hline \parbox{\wcA}{\vspace{3pt}\noindent 2030\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent histone-lysine n-methyltransferase, h3 lysine-9 specific 2 (ec 2.1.1.43) (histone h3-k9 methyltransferase 2) (h3-k9-hmtase 2) (suppressor of variegation 3-9 homolog 2) (su(var)3-9 homolog 2). [source:swissprot;acc:q9h5i1]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5060.82\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 5350.93\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.05732\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2031\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent eukaryotic translation initiation factor 2 subunit 1 (eukaryotic translation initiation factor 2 alpha subunit) (eif-2-alpha) (eif- 2alpha) (eif-2a). [source:swissprot;acc:p05198]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2032\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent histone-lysine n-methyltransferase, h3 lysine-9 specific 1 (ec 2.1.1.43) (histone h3-k9 methyltransferase 1) (h3-k9-hmtase 1) (suppressor of variegation 3-9 homolog 1) (su(var)3-9 homolog 1). [source:swissprot;acc:o43463]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2033\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dead-box protein abstrakt homolog. [source:swissprot;acc:q9ujv9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6101.12\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6449.87\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05716\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2034\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent topoisomerase (dna) ii binding protein. [source:refseq;acc:nm\_007027]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 6920.71\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 7315.59\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.05706\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2035\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent acyl-coenzyme a oxidase 1, peroxisomal (ec 1.3.3.6) (palmitoyl-coa oxidase) (aox). [source:swissprot;acc:q15067]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2036\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent atp synthase f chain, mitochondrial (ec 3.6.3.14). [source:swissprot;acc:p56134]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2037\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent probable atp-dependent helicase ddx35 (deah-box protein 35). [source:swissprot;acc:q9h5z1]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2038\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent transcription initiation factor tfiid 70 kda subunit (tafii-70) (tafii-80) (tafii80). [source:swissprot;acc:p49848]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7088.08\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7492.23\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05702\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2039\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent mitochondrial ribosomal protein l4 isoform a. [source:refseq;acc:nm\_015956]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3646.01\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3449.54\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05696\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2040\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent rho-gtpase-activating protein 8. [source:swissprot;acc:q9nsg0]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 6036.68\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6379.44\vspace{3pt}}}&\multirow{9}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.05678\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2041\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent rho-gtpase-activating protein 1 (gtpase-activating protein rhoogap) (rho-related small gtpase protein activator) (cdc42 gtpase-activating protein) (p50-rhogap). [source:swissprot;acc:q07960]\vspace{3pt}}&&&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2042\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent kinesin light chain 2 (klc 2). [source:swissprot;acc:q9h0b6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6036.62\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6379.38\vspace{3pt}}&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2043\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent kinesin heavy chain (ubiquitous kinesin heavy chain) (ukhc). [source:swissprot;acc:p33176]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 6036.68\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6379.44\vspace{3pt}}}&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2044\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent kinesin heavy chain isoform 5c (kinesin heavy chain neuron-specific 2). [source:swissprot;acc:o60282]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2045\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent neuronal kinesin heavy chain (nkhc) (kinesin heavy chain isoform 5a) (kinesin heavy chain neuron-specific 1). [source:swissprot;acc:q12840]\vspace{3pt}}&&&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2046\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent kinesin light chain 1 (klc 1). [source:swissprot;acc:q07866]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6036.73\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6379.48\vspace{3pt}}&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2047\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent transcription factor iiia (factor a) (tfiiia). [source:swissprot;acc:q92664]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 6036.68\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6379.44\vspace{3pt}}}&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2048\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent exocyst complex component sec3 (bm-012). [source:swissprot;acc:q9nv70]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2049\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent swi/snf-related matrix-associated actin-dependent regulator of chromatin c2 isoform a; mammalian chromatin remodeling complex brg1-associated factor 170; chromatin remodeling complex baf170 subunit; swi3-like protein; swi/snf complex 170 kda subunit. [source:refseq;acc:nm\_003075]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5634.94\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5953.19\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05648\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2050\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent adapter-related protein complex 2 beta 1 subunit (beta-adaptin) (plasma membrane adaptor ha2/ap2 adaptin beta subunit) (clathrin assembly protein complex 2 beta large chain) (ap105b). [source:swissprot;acc:p21851]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5556.36\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5870.11\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05647\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2051\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 60s ribosomal protein l26. [source:swissprot;acc:q02877]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3601.97\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3409.48\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05646\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2052\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent polybromo 1. [source:refseq;acc:nm\_018165]\vspace{3pt}}&\multirow{6}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5634.8\vspace{3pt}}}&\multirow{6}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 5952.7\vspace{3pt}}}&\multirow{6}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.05642\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2053\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent swi/snf-related matrix-associated actin-dependent regulator of chromatin a5; sucrose nonfermenting-like 5. [source:refseq;acc:nm\_003601]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2054\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent possible global transcription activator snf2l4 (snf2-beta) (brg-1 protein) (mitotic growth and transcription activator) (brahma protein homolog 1). [source:swissprot;acc:p51532]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2055\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent possible global transcription activator snf2l1. [source:swissprot;acc:p28370]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2056\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent tbp-associated factor 172 (taf-172) (taf(ii)170). [source:swissprot;acc:o14981]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2057\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent possible global transcription activator snf2l2 (snf2-alpha). [source:swissprot;acc:p51531]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2058\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent adapter-related protein complex 1 sigma 1b subunit (sigma-adaptin 1b) (adaptor protein complex ap-1 sigma-1b subunit) (golgi adaptor ha1/ap1 adaptin sigma-1b subunit) (clathrin assembly protein complex 1 sigma- 1b small chain) (sigma 1b subunit of ap-1 clathrin) (dc22). [source:swissprot;acc:p56377]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5552.69\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 5865.84\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.0564\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2059\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent adapter-related protein complex 1 gamma 1 subunit (gamma-adaptin) (adaptor protein complex ap-1 gamma-1 subunit) (golgi adaptor ha1/ap1 adaptin gamma-1 subunit) (clathrin assembly protein complex 1 gamma-1 large chain). [source:swissprot;acc:o43747]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2060\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent adapter-related protein complex 1 sigma 1c subunit (sigma-adaptin 1c) (adaptor protein complex ap-1 sigma-1c subunit) (golgi adaptor ha1/ap1 adaptin sigma-1c subunit) (clathrin assembly protein complex 1 sigma- 1c small chain) (sigma 1c subunit of ap-1 clathrin). [source:swissprot;acc:q96pc3]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2061\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent adapter-related protein complex 1 sigma 1a subunit (sigma-adaptin 1a) (adaptor protein complex ap-1 sigma-1a subunit) (golgi adaptor ha1/ap1 adaptin sigma-1a subunit) (clathrin assembly protein complex 1 sigma- 1a small chain) (clathrin coat assembly protein ap19) (ha1 19 kda subunit) (sigma 1a subunit of ap-1 clathrin). [source:swissprot;acc:q00382]\vspace{3pt}}&&&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2062\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent adapter-related protein complex 1 gamma 2 subunit (gamma2-adaptin) (adaptor protein complex ap-1 gamma-2 subunit) (g2ad). [source:swissprot;acc:o75843]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5552.7\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5865.85\vspace{3pt}}&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2063\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent swi/snf-related matrix-associated actin-dependent regulator of chromatin c1; mammalian chromatin remodeling complex brg1-associated factor 155; swi/snf complex 155 kda subunit; chromatin remodeling complex baf155 subunit. [source:refseq;acc:nm\_003074]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5634.63\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5952.14\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05635\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2064\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent adapter-related protein complex 1 beta 1 subunit (beta-adaptin 1) (adaptor protein complex ap-1 beta-1 subunit) (golgi adaptor ha1/ap1 adaptin beta subunit) (clathrin assembly protein complex 1 beta large chain). [source:swissprot;acc:q10567]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5548.79\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5861.31\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05632\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2065\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 60s ribosomal protein l35. [source:swissprot;acc:p42766]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3602.25\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3410.23\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05631\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2066\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent similar to glucosamine-phosphate n-acetyltransferase (hypothetical protein flj33258). [source:sptrembl;acc:q96ek6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5882.61\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6213.34\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05622\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2067\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 40s ribosomal protein s15 (rig protein). [source:swissprot;acc:p11174]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 3602.75\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent 3411.18\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.05616\vspace{3pt}}}\\\cline{1-2}\cline{4-4} \parbox{\wcA}{\vspace{3pt}\noindent 2068\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent mitochondrial ribosomal protein l2. [source:refseq;acc:nm\_015950]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 3411.17\vspace{3pt}}&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2069\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dna-directed rna polymerase i 16 kda polypeptide (ec 2.7.7.6) (rpa16). [source:swissprot;acc:q9y2s0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4632.65\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4892.66\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05613\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2070\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent splicing factor, proline-and glutamine-rich (polypyrimidine tract- binding protein-associated splicing factor) (ptb-associated splicing factor) (psf) (dna-binding p52/p100 complex, 100 kda subunit). [source:swissprot;acc:p23246]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 10178.5\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 9638.08\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05607\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2071\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 28s ribosomal protein s26, mitochondrial precursor (mrp-s26) (mrp- s13). [source:swissprot;acc:q9byn8]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 6437.24\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6797.24\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.05592\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2072\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent enhancer of rudimentary homolog. [source:swissprot;acc:q14259]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2073\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent peptidylprolyl isomerase-like 4; cyclophilin-type peptidyl-prolyl cis-trans isomerase; ppiase; serologically defined breast cancer antigen ny-br-18. [source:refseq;acc:nm\_139126]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6083.39\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6423.12\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05585\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2074\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 60s ribosomal protein l14 (cag-isl 7). [source:swissprot;acc:p50914]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 3614.91\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 3423.89\vspace{3pt}}}&\multirow{6}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.05579\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2075\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent serine racemase (ec 5.1.1.-). [source:swissprot;acc:q9gzt4]\vspace{3pt}}&&&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2076\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent af-6 protein. [source:swissprot;acc:p55196]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5746.65\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6067.27\vspace{3pt}}&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2077\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 60s ribosomal protein l34. [source:swissprot;acc:p49207]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 3614.91\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 3423.89\vspace{3pt}}}&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2078\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent protein transport protein sec61 alpha subunit isoform 2 (sec61 alpha- 2). [source:swissprot;acc:q9y2r3]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2079\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent protein transport protein sec61 alpha subunit isoform 1 (sec61 alpha- 1). [source:swissprot;acc:p38378]\vspace{3pt}}&&&\\\hline nd{longtable}
Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.

- http://analysis.yellowcouch.org/