Scientific

MK5 Microarray Data


Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 2030 to 2079 of 14920 in total
Network Comparison Type: Divided
Interaction Map: High confidence
\def\wcA{0.125\textwidth} \def\wcB{0.125\textwidth} \def\wcC{0.125\textwidth} \def\wcD{0.125\textwidth} \def\wcE{0.125\textwidth} \def\wcF{0.125\textwidth} \def\wcG{0.125\textwidth} \begin{longtable}{|c|c|c|c|c|c|c|} \hline \parbox{\wcA}{\vspace{3pt}\noindent Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Filtered\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent red\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent green\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent network\_comparison\vspace{3pt}}\\ \hline \hline \multirow{3}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 254\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent signal recognition particle 9 kda protein (srp9). [source:swissprot;acc:p49458]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 1\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 53.607\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 60.4452\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.12756\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent source of immunodominant mhc-associated peptides; homolog of yeast stt3 gene. [source:refseq;acc:nm\_178862]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 200.691\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 179.88\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.11569\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent zinc finger protein slug (neural crest transcription factor slug) (snail homolog 2). [source:swissprot;acc:o43623]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 69165\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 52991.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.3052\vspace{3pt}}\\\hline \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 255\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent 40s ribosomal protein s4, x isoform (single copy abundant mrna protein) (scr10). [source:swissprot;acc:p12750]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 0\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1317.84\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1495.22\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.1346\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent c-terminal binding protein 1 (ctbp1). [source:swissprot;acc:q13363]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 69123.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 52967\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.30503\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent dj408b20.3 (novel protein similar to 60s acidic ribosomal protein p2 (rplp2)). [source:sptrembl;acc:q9h5a9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 0\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 28.4183\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 31.4149\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.10545\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent dj947l8.1.6 (novel cub and sushi (scr repeat) domain protein) (fragment). [source:sptrembl;acc:q9h4w2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 220.837\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 280.438\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.26989\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent oligosaccharyl transferase stt3 subunit homolog (b5) (integral membrane protein 1) (tmc). [source:swissprot;acc:p46977]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 1\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 200.691\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 179.88\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.11569\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent proto-oncogene tyrosine-protein kinase fgr (ec 2.7.1.112) (p55-fgr) (c-fgr). [source:swissprot;acc:p09769]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 6417.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 7859.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.22477\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent ribonucleoside-diphosphate reductase m2 chain (ec 1.17.4.1) (ribonucleotide reductase small chain). [source:swissprot;acc:p31350]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 62.9007\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 70.8854\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.12694\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent star-related lipid transfer protein 6 (stard6) (start domain- containing protein 6). [source:swissprot;acc:p59095]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 0\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 10551.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 11573.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.09685\vspace{3pt}}\\\hline \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 256\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent ccaat-box-binding transcription factor (ccaat-binding factor) (cbf). [source:swissprot;acc:q03701]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 48.0045\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 54.0843\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.12665\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent espin. [source:refseq;acc:nm\_031475]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 0\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 10551.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 11573.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.09684\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent formin binding protein 3; fas-ligand associated factor 1; huntingtin-interacting protein a; ny-ren-6 antigen. [source:refseq;acc:nm\_017892]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent 1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 15465.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 20151\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.303\vspace{3pt}}\\\cline{2-2}\cline{4-7} &\parbox{\wcB}{\vspace{3pt}\noindent glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1 (ec 2.6.1.16) (hexosephosphate aminotransferase 1) (d-fructose-6- phosphate amidotransferase 1) (gfat 1) (gfat1). [source:swissprot;acc:q06210]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 0\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 4766.78\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 3763.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.26645\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent glycine cleavage system h protein, mitochondrial precursor. [source:swissprot;acc:p23434]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 24.8155\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 27.4116\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.10462\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent grb2-related adaptor protein 2 (gads protein) (growth factor receptor binding protein) (grblg) (grf40 adaptor protein) (grf-40) (grb-2-like protein) (grb2l) (grbx) (p38) (hematopoietic cell-associated adaptor protein grpl) (adapter protein grid) (sh3-sh2-sh3 adaptor mona). [source:swissprot;acc:o75791]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent 1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 6417.19\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 7859.51\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.22476\vspace{3pt}}\\\cline{2-2}\cline{4-7} &\parbox{\wcB}{\vspace{3pt}\noindent keratin associated protein 9-4; keratin associated protein 9.4. [source:refseq;acc:nm\_033191]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 0\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1224.65\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1079.77\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.13418\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent max interacting protein 1 (mxi1 protein). [source:swissprot;acc:p50539]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 227.999\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 204.357\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.11569\vspace{3pt}}\\\hline \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 257\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent 40s ribosomal protein s4, y isoform 2. [source:swissprot;acc:q8td47]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent 0\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 21.1374\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 23.3445\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.10442\vspace{3pt}}\\\cline{2-2}\cline{4-7} &\parbox{\wcB}{\vspace{3pt}\noindent cartilage oligomeric matrix protein precursor (comp). [source:swissprot;acc:p49747]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 1\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 51.6125\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 45.8409\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.12591\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent ccaat displacement protein (cdp) (cut-like 1). [source:swissprot;acc:p39880]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent 6417.31\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 7858.12\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.22452\vspace{3pt}}\\\cline{2-2}\cline{4-7} &\parbox{\wcB}{\vspace{3pt}\noindent creatine kinase, ubiquitous mitochondrial precursor (ec 2.7.3.2) (u- mtck) (mia-ck) (acidic-type mitochondrial creatine kinase). [source:swissprot;acc:p12532]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 0\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 861.401\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 759.896\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.13358\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kda subunit precursor (ec 2.4.1.119) (oligosaccharyl transferase 48 kda subunit) (ddost 48 kda subunit). [source:swissprot;acc:p39656]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 1\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 200.691\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 179.88\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.11569\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent huntingtin-interacting protein hypa/fbp11 (fragment). [source:sptrembl;acc:o75404]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 15482.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 20162.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.30229\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent keratin associated protein 9-4; keratin associated protein 9.4. [source:refseq;acc:nm\_033191]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&\multirow{6}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 0\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 10552.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 11566.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.09611\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent mitochondrial 28s ribosomal protein s22 (s22mt) (mrp-s22) (gk002). [source:swissprot;acc:p82650]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 1.60583\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1.26833\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.2661\vspace{3pt}}\\\cline{1-3}\cline{5-7} \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 258\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent 40s ribosomal protein s15 (rig protein). [source:swissprot;acc:p11174]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 1183.16\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1337.54\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.13048\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent 40s ribosomal protein s28. [source:swissprot;acc:p25112]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 12967.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 14193.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.09459\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent 40s ribosomal protein s4, x isoform (single copy abundant mrna protein) (scr10). [source:swissprot;acc:p12750]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 21.1334\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 23.34\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.10441\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent adenylate kinase isoenzyme 4, mitochondrial (ec 2.7.4.3) (atp-amp transphosphorylase). [source:swissprot;acc:p27144]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 2783.53\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 3517.26\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.2636\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent homeobox protein cux-2 (cut-like 2) (fragment). [source:swissprot;acc:o14529]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 1\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 6417.33\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 7857.93\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.22449\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent huntingtin interacting protein 1 (hip-i). [source:swissprot;acc:o00291]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 76438\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 58889.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.29799\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent max-interacting transcriptional repressor mad4 (max-associated protein 4) (max dimerization protein 4). [source:swissprot;acc:q14582]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 227.999\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 204.366\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.11564\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent thrombospondin 3 precursor. [source:swissprot;acc:p49746]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent 51.6132\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 45.8422\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.12589\vspace{3pt}}\\\cline{1-2}\cline{4-7} \multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 259\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent 40s ribosomal protein sa (p40) (34/67 kda laminin receptor) (colon carcinoma laminin-binding protein) (nem/1chd4) (multidrug resistance- associated protein mgr1-ag). [source:swissprot;acc:p08865]\vspace{3pt}}&&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 0\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 21.9471\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 19.8816\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.10389\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent 60s ribosomal protein l10a (csa-19). [source:swissprot;acc:p53025]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 3438.01\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 4339.96\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.26235\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent 60s ribosomal protein l23a. [source:swissprot;acc:p29316]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 1295.49\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1463.51\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.1297\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent adenylyl cyclase-associated protein 2 (cap 2). [source:swissprot;acc:p40123]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 10438.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 9549.77\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.09304\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent goodpasture antigen-binding protein (ec 2.7.1.37) (gpbp) (collagen type iv alpha 3 binding protein) (star-related lipid transfer protein 11) (stard11) (start domain-containing protein 11). [source:swissprot;acc:q9y5p4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 1\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 76360.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 58841.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.29773\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent max dimerization protein 3; likely ortholog of mouse max dimerization protein 3. [source:refseq;acc:nm\_031300]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 227.999\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 204.37\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.11562\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent neural wiskott-aldrich syndrome protein (n-wasp). [source:swissprot;acc:o00401]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 6417.81\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 7852.52\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.22355\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent tuftelin-interacting protein 11 (hspc006). [source:swissprot;acc:q9ubb9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent 58.2964\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 65.5926\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.12516\vspace{3pt}}\\\hline \multirow{7}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 260\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent 40s ribosomal protein s4, y isoform 2. [source:swissprot;acc:q8td47]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Ranked\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent 0\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 12447.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 11392.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.0926\vspace{3pt}}\\\cline{2-2}\cline{4-7} &\parbox{\wcB}{\vspace{3pt}\noindent c439a6.1 (novel protein similar to heparan sulfate (glucosamine) 3-o- sulfotransferases) (fragment). [source:sptrembl;acc:q96qi5]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 219.421\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 196.978\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.11394\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent histone h4. [source:swissprot;acc:p02304]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Squared\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent 0\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 273623\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 345123\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.26131\vspace{3pt}}\\\cline{2-2}\cline{4-7} &\parbox{\wcB}{\vspace{3pt}\noindent huntingtin interacting protein 1 related (hip1-related) (hip 12). [source:swissprot;acc:o75146]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 1\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent 76296.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 58801.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.29752\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent multisynthetase complex auxiliary component p43 [contains: endothelial-monocyte activating polypeptide ii (emap-ii) (small inducible cytokine subfamily e member 1)]. [source:swissprot;acc:q12904]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent Rooted\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent 59.0951\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 66.4332\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.12417\vspace{3pt}}\\\cline{2-2}\cline{4-7} &\parbox{\wcB}{\vspace{3pt}\noindent ribosomal protein l10-like protein. [source:refseq;acc:nm\_080746]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 0\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 22.3157\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 24.6207\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.10329\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent signal recognition particle 9 kda protein (srp9). [source:swissprot;acc:p49458]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 4244.95\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 5193.42\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1.22343\vspace{3pt}}\\\hline nd{longtable}
Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.

- http://analysis.yellowcouch.org/