Scientific
MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis
These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.
MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.
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Rank Gene Hugo Network Comparison Type description Value Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX
Showing element 2025 to 2074 of 66312 in total
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\def\wcB{0.1\textwidth}
\def\wcC{0.1\textwidth}
\def\wcD{0.1\textwidth}
\def\wcE{0.1\textwidth}
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\begin{longtable}{|c|c|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Network Comparison Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
Interaction Map\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
127\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
JUND\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
transcription factor jun-d. [source:swissprot;acc:p17535]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
5638.2\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7523.39\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.33436\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
MAN1B1\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase (ec 3.2.1.113) (er alpha-1,2-mannosidase) (mannosidase alpha class 1b member 1) (man9glcnac2-specific processing alpha-mannosidase). [source:swissprot;acc:q9ukm7]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
66.9562\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
72.3243\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
5.3681\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
MIP\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
lens fiber major intrinsic protein (mip26) (mp26) (aquaporin 0). [source:swissprot;acc:p30301]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
71386.9\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
96032.5\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
24645.6\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
PBLD\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
mawd binding protein (unknown protein 32 from 2d-page of liver tissue). [source:swissprot;acc:p30039]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10087.8\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
10870.9\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
783.1\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
RHOBTB2\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
rho-related btb domain-containing protein 2 (deleted in breast cancer 2 gene protein) (p83). [source:swissprot;acc:q9byz6]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
450.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2394.5\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1944\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
SLC16A2\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
monocarboxylate transporter 8 (mct 8) (x-linked pest-containing transporter) (mct 7). [source:swissprot;acc:p36021]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
63904\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
72791.6\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.13908\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
VPS33B\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
vacuolar protein sorting 33b (hvps33b). [source:swissprot;acc:q9h267]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
203.678\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
190.88\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.06705\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
VPS41\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
vacuolar assembly protein vps41 homolog (s53). [source:swissprot;acc:p49754]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
70.0842\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
75.3627\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.07532\vspace{3pt}}\\\cline{1-2}\cline{4-9}
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
128\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
pnas-18. [source:sptrembl;acc:q9bzu3]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
87787.3\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
58155.8\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.50952\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
APC2\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
adenomatous polyposis coli like. [source:refseq;acc:nm\_005883]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
222.34\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
235.547\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
13.207\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
AQP1\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
aquaporin-chip (water channel protein for red blood cells and kidney proximal tubule) (aquaporin 1) (aqp-1) (urine water channel). [source:swissprot;acc:p29972]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
71346.6\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
95965.1\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
24618.5\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
LENG4\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
malignant cell expression-enhanced gene/tumor progression-enhanc. [source:refseq;acc:nm\_024298]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
64.4748\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
60.0381\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.0739\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
LUC7L2\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
luc7-like 2; cgi-74 protein; cgi-59 protein. [source:refseq;acc:nm\_016019]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
4355.61\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
5810.82\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.3341\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
MAGEA10\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
melanoma-associated antigen 10 (mage-10 antigen). [source:swissprot;acc:p43363]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
11285.3\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
10318.5\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.0937\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
PBLD\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
mawd binding protein (unknown protein 32 from 2d-page of liver tissue). [source:swissprot;acc:p30039]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
60522.9\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
67721\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
7198.1\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
PSEN1\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
presenilin 1 (ps-1) (s182 protein). [source:swissprot;acc:p49768]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
285.684\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
252.234\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
33.45\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
PSEN2\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
presenilin 2 (ps-2) (stm-2) (e5-1) (ad3lp) (ad5). [source:swissprot;acc:p49810]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
66.9562\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
72.3243\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
5.3681\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
PTPRA\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
vacuolar protein sorting 16 (hvps16). [source:swissprot;acc:q9h269]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
7263.76\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
8046.29\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
782.53\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
SLC16A10\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
solute carrier family 16 (monocarboxylic acid transporters), member 10; t-type amino acid transporter 1. [source:refseq;acc:nm\_018593]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
63903.1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
72790.2\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.13907\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
STAMBP\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
associated molecule with the sh3 domain of stam. [source:refseq;acc:nm\_006463]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
94\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
114\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.21277\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
STRN\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
striatin. [source:swissprot;acc:o43815]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
214.085\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
200.796\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.06618\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
TARDBP\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
tar dna-binding protein-43 (tdp-43). [source:swissprot;acc:q13148]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
48.0515\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
39.0445\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.23069\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
TCP1\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
t-complex protein 1, alpha subunit (tcp-1-alpha) (cct-alpha). [source:swissprot;acc:p17987]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
11004.2\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
12944.2\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1940\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
TIA1\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
nucleolysin tia-1 (rna-binding protein tia-1) (p40-tia-1) [contains: p15-tia-1]. [source:swissprot;acc:p31483]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
54.6527\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
67.9743\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
13.3216\vspace{3pt}}\\\hline
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
129\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
COL4A3BP\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
goodpasture antigen-binding protein (ec 2.7.1.37) (gpbp) (collagen type iv alpha 3 binding protein) (star-related lipid transfer protein 11) (stard11) (start domain-containing protein 11). [source:swissprot;acc:q9y5p4]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
220.969\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
235.572\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.06609\vspace{3pt}}\\\cline{2-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
CUL1\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
cullin homolog 1 (cul-1). [source:swissprot;acc:q13616]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
285.684\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
252.234\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
33.45\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
FBXW7\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
f-box protein fbw7 isoform 2; archipelago, drosophila, homolog of; f-box protein fbw7; f-box protein sel-10; homolog of c elegans sel-10. [source:refseq;acc:nm\_018315]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
66.9562\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
72.3243\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
5.3681\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
LUC7L\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
luc7-like; sarcoplasmic reticulum protein luc7b1. [source:refseq;acc:nm\_018032]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
4358.13\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
5811.49\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.33348\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
MAGEB4\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
melanoma-associated antigen b1 (mage-b1 antigen) (mage-xp antigen) (dss-ahc critical interval mage superfamily 10) (dam10). [source:swissprot;acc:p43366]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
11285.3\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
10318.5\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.0937\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
NCBP2L\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
dj820b18.1 (similar to nuclear cap binding protein) (fragment). [source:sptrembl;acc:q8wwk2]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
54.2343\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
66.7323\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.23044\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
NDUFS4\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
nadh-ubiquinone oxidoreductase 18 kda subunit, mitochondrial precursor (ec 1.6.5.3) (ec 1.6.99.3) (complex i-18 kda) (ci-18 kda) (complex i- aqdq) (ci-aqdq). [source:swissprot;acc:o43181]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
62.9048\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
67.5424\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.07372\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
PCF11\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
pre-mrna cleavage complex ii protein pcf11 (fragment). [source:swissprot;acc:o94913]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
178263\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
118639\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.50257\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
PHB\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
prohibitin. [source:swissprot;acc:p35232]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10642\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
11422.5\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
780.5\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
PPP1R13B\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
protein phosphatase 1, regulatory (inhibitor) subunit 13b; apoptosis-stimulating protein of p53, 1. [source:refseq;acc:nm\_015316]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
15274.9\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
13346.9\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1928\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
RRAGB\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
ras-related gtp binding b short isoform; gtp-binding protein ragb. [source:refseq;acc:nm\_006064]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
56860.4\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
64686.5\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.13764\vspace{3pt}}\\\cline{2-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
SSR4\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
translocon-associated protein, delta subunit precursor (trap-delta) (signal sequence receptor delta subunit) (ssr-delta). [source:swissprot;acc:p51571]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
71062.4\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
95488.9\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
24426.5\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
TAGLN\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
transgelin (smooth muscle protein 22-alpha) (sm22-alpha) (ws3-10) (22 kda actin-binding protein). [source:swissprot;acc:q01995]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
218.561\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
205.431\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
13.13\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
TIAL1\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
nucleolysin tiar (tia-1 related protein). [source:swissprot;acc:q01085]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
54.6625\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
67.9477\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
13.2852\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
UBR4\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
retinoblastoma-associated factor 600. [source:refseq;acc:nm\_020765]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
27909.1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
35068.7\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
7159.6\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
VPS24\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
neuroendocrine differentiation factor; comparative gene identification transcript 149. [source:refseq;acc:nm\_016079]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
94\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
114\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.21277\vspace{3pt}}\\\cline{1-2}\cline{4-5}\cline{7-9}
\multirow{10}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
130\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
formin binding protein 3; fas-ligand associated factor 1; huntingtin-interacting protein a; ny-ren-6 antigen. [source:refseq;acc:nm\_017892]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
55.1026\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
67.5701\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.22626\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
ABRA\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
striated muscle activator of rho-dependent signaling. [source:refseq;acc:nm\_139166]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
225.495\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
211.529\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.06602\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
ARHGEF5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
rho guanine nucleotide exchange factor 5 (guanine nucleotide regulatory protein tim) (oncogene tim) (p60 tim) (transforming immortalized mammary oncogene). [source:swissprot;acc:q12774]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
58231.9\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
51117.1\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
7114.8\vspace{3pt}}\\\cline{2-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
C10orf83\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
44050 protein. [source:refseq;acc:nm\_178832]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
148058\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
99628.4\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.4861\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
CHMP4A\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
protein hspc134 (protein cda04). [source:swissprot;acc:q9by43]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
94\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
114\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.21277\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
CLSTN1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
calsyntenin-1 precursor. [source:swissprot;acc:o94985]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
71062.4\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
95488.9\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
24426.5\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
DAD1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
defender against cell death 1 (dad-1). [source:swissprot;acc:p46966]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
69.1344\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
74.2065\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.07337\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
EGFL8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
palmitoyl-protein thioesterase 2 precursor (ec 3.1.2.22) (palmitoyl- protein hydrolase 2) (ppt-2) (g14). [source:swissprot;acc:q9umr5]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
242.735\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
276.059\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
33.324\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
FOXP4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
forkhead box p4; fork head-related protein like a; winged-helix repressor foxp4. [source:refseq;acc:nm\_138457]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
2234.68\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2978.53\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.33287\vspace{3pt}}\\\cline{2-4}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
GATAD2A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
p66 alpha. [source:refseq;acc:nm\_017660]\vspace{3pt}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
12839\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
10911.1\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1927.9\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Hugo is the HGNC identifier if it exists

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/