Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene Hugo description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 1851 to 1900 of 3228 in total 
Value Type: Ranked
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

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\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
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\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1851\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ACOT4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
peroxisomal acyl-coa thioesterase 2b; likely ortholog of mouse peroxisomal acyl-coa thioesterase 2b. [source:refseq;acc:nm\_152331]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.448\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
216.08\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01096\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1852\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3-hydroxyisobutyryl-coenzyme a hydrolase. [source:refseq;acc:nm\_014362]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
196.008\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
198.154\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01095\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
1853\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TTL\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
tubulin-tyrosine ligase. [source:refseq;acc:nm\_153712]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.924\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
215.564\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1854\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
EIF2B5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
translation initiation factor eif-2b epsilon subunit (eif-2b gdp-gtp exchange factor). [source:swissprot;acc:q13144]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
222.215\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
224.637\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.0109\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
1855\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
GRSF1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
g-rich sequence factor-1 (grsf-1). [source:swissprot;acc:q12849]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.891\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
215.542\vspace{3pt}}&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
1856\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
HNRPH3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
heterogeneous nuclear ribonucleoprotein h3 (hnrnp h3) (hnrnp 2h9). [source:swissprot;acc:p31942]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.892\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
215.543\vspace{3pt}}&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
1857\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
EIF2B3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
translation initiation factor eif-2b gamma subunit (eif-2b gdp-gtp exchange factor). [source:swissprot;acc:q9nr50]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
222.215\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
224.637\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1858\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
HNRPF\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
heterogeneous nuclear ribonucleoprotein f (hnrnp f). [source:swissprot;acc:p52597]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.893\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
215.545\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01089\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
1859\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
HNRPH1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
heterogeneous nuclear ribonucleoprotein h (hnrnp h). [source:swissprot;acc:p31943]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
217.895\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
215.547\vspace{3pt}}}&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1860\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
HNRPH2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
heterogeneous nuclear ribonucleoprotein h' (hnrnp h') (ftp-3). [source:swissprot;acc:p55795]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1861\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CYB5R2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytochrome b5 reductase b5r.2. [source:refseq;acc:nm\_016229]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
210.856\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
213.147\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01087\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1862\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CYB5R1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytochrome b5 reductase 1 (b5r.1). [source:refseq;acc:nm\_016243]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1863\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CYB5R3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nadh-cytochrome b5 reductase (ec 1.6.2.2) (b5r). [source:swissprot;acc:p00387]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1864\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PUF60\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
fuse-binding protein-interacting repressor isoform b; siah binding protein 1; pyrimidine tract binding splicing factor; ro ribonucleoprotein-binding protein 1; poly-u binding splicing factor puf60. [source:refseq;acc:nm\_014281]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
203.071\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
200.89\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01086\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
1865\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
EIF2S3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
eukaryotic translation initiation factor 2 subunit 3 (eukaryotic translation initiation factor 2 gamma subunit) (eif-2-gamma). [source:swissprot;acc:p41091]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
221.639\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
224.046\vspace{3pt}}&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
1866\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
EIF2B4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
translation initiation factor eif-2b delta subunit (eif-2b gdp-gtp exchange factor). [source:swissprot;acc:q9ui10]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
221.725\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
224.133\vspace{3pt}}&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
1867\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
multisynthetase complex auxiliary component p38 (jtv-1 protein) (pro0992). [source:swissprot;acc:q13155]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
203.071\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
200.89\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1868\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TPD52L3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein kinase nyd-sp25. [source:refseq;acc:nm\_033516]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
207.642\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
209.895\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01085\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1869\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
LANCL2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
lanc lantibiotic synthetase component c-like 2; testis-specific adriamycin sensitivity protein; lanc (bacterial lantibiotic synthetase component c)-like 2; g protein-coupled receptor 69b. [source:refseq;acc:nm\_018697]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
220.107\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
217.75\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01082\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1870\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
LANCL1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
lanthionine synthetase c-like protein 1; g protein-coupled receptor 69a; lanc (bacterial lantibiotic synthetase component c)-like 1; lanc (bacterial lantibiotic synthetase component). [source:refseq;acc:nm\_006055]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1871\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CLPX\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
atp-dependent clp protease atp-binding subunit clpx-like, mitochondrial precursor. [source:swissprot;acc:o76031]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
222.819\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
225.228\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01081\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1872\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
POLDIP2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dna polymerase delta p38 subunit. [source:refseq;acc:nm\_015584]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1873\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
scratch; scratch 1. [source:refseq;acc:nm\_031309]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
210.55\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
208.305\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01078\vspace{3pt}}\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
1874\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
williams-beuren syndrome critical region protein 20 copy b. [source:refseq;acc:nm\_145645]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
223.862\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
226.271\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01076\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1875\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
NSUN5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
williams beuren syndrome critical region 20a isoform 2; nol1/nop2/sun gene family member; williams-beuren syndrome critical region protein 20 copy a; williams beuren syndrome chromosome region 20. [source:refseq;acc:nm\_018044]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1876\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
NSUN5B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
williams beuren syndrome chromosome region 20c isoform 1. [source:refseq;acc:nm\_032158]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1877\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
NUCB1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nucleobindin 1 precursor (calnuc). [source:swissprot;acc:q02818]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
212.186\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
214.467\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01075\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1878\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MLH1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dna mismatch repair protein mlh1 (mutl protein homolog 1). [source:swissprot;acc:p40692]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1879\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
NUCB2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nucleobindin 2 precursor (dna-binding protein nefa). [source:swissprot;acc:p80303]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1880\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CDA\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytidine deaminase (ec 3.5.4.5) (cytidine aminohydrolase). [source:swissprot;acc:p32320]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
220.852\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
223.225\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01074\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
1881\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dj850e9.1 (novel c2h2 type zinc finger protein similar to drosophila scratch (scrt), slug and xenopus snail) (fragment). [source:sptrembl;acc:q9nq03]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
210.592\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
208.355\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1882\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RPL28\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l28. [source:swissprot;acc:p46779]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.896\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.61\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0107\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1883\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PFKP\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6-phosphofructokinase, type c (ec 2.7.1.11) (phosphofructokinase 1) (phosphohexokinase) (phosphofructo-1-kinase isozyme c) (pfk-c) (6-phosphofructokinase, platelet type). [source:swissprot;acc:q01813]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
240.317\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
242.881\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01067\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1884\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
OLA1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
putative gtp-binding protein ptd004 (pro2455). [source:swissprot;acc:q9ntk5]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.081\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
217.373\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01066\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1885\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ARG1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
arginase 1 (ec 3.5.3.1) (liver-type arginase). [source:swissprot;acc:p05089]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
204.44\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
206.615\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01064\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1886\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ARG2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
arginase ii, mitochondrial precursor (ec 3.5.3.1) (non-hepatic arginase) (kidney-type arginase). [source:swissprot;acc:p78540]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
204.512\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
206.682\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01061\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
1887\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SARM1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
sterile alpha and tir motif containing 1; sterile alpha and heat/armadillo motif protein, ortholog of drosophila. [source:refseq;acc:nm\_015077]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
220.896\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
218.577\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1888\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ICT1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
immature colon carcinoma transcript 1 (digestion substraction 1) (ds- 1). [source:swissprot;acc:q14197]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.414\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
216.131\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01056\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1889\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RAB3IL1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rab3a interacting protein (rabin3)-like 1. [source:refseq;acc:nm\_013401]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
211.27\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
209.067\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01054\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
1890\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RAB3IP\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rab3a interacting protein isoform alpha 1; rabin3; ssx2 interacting protein. [source:refseq;acc:nm\_022456]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
211.314\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
209.111\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1891\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MCM3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dna replication licensing factor mcm3 (dna polymerase alpha holoenzyme-associated protein p1) (rlf beta subunit) (p102 protein) (p1-mcm3). [source:swissprot;acc:p25205]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
233.828\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
231.395\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01051\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1892\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
KEAP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
kelch-like ech-associated protein 1 (cytosolic inhibitor of nrf2). [source:swissprot;acc:q14145]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1893\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
GMPPB\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
gdp-mannose pyrophosphorylase b isoform 1; mannose-1-phosphate guanylyltransferase; amphoterin induced gene 3. [source:refseq;acc:nm\_013334]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
222.842\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
225.17\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01045\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1894\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
GMPPA\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
gdp-mannose pyrophosphorylase a; mannose-1-phosphate guanylyltransferase (gdp). [source:refseq;acc:nm\_013335]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1895\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CAP2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
adenylyl cyclase-associated protein 2 (cap 2). [source:swissprot;acc:p40123]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.853\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.639\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01036\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1896\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
LDB2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
lim domain binding 2; lim binding domain 2; lim domain-binding factor-2. [source:refseq;acc:nm\_001290]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
199.883\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
197.835\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.01035\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1897\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
lim domain binding 1; carboxy terminal lim domain protein 2; lim domain-binding factor-1. [source:refseq;acc:nm\_003893]\vspace{3pt}}&&&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
1898\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
LHX4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
lim/homeobox protein lhx4. [source:swissprot;acc:q969g2]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
199.881\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
197.833\vspace{3pt}}&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
1899\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
LHX3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
lim/homeobox protein lhx3. [source:swissprot;acc:q9ubr4]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
199.884\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
197.837\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1900\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SLC27A4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
solute carrier family 27 (fatty acid transporter), member 4; fatty acid transport protein 4. [source:refseq;acc:nm\_005094]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
191.401\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
193.38\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.01034\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Hugo is the HGNC identifier if it exists

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/