Scientific

MK5 Microarray Data


Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 1832 to 1881 of 3228 in total
Value Type: Measured
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1
\def\wcA{0.16666666666667\textwidth} \def\wcB{0.16666666666667\textwidth} \def\wcC{0.16666666666667\textwidth} \def\wcD{0.16666666666667\textwidth} \def\wcE{0.16666666666667\textwidth} \begin{longtable}{|c|c|c|c|c|} \hline \parbox{\wcA}{\vspace{3pt}\noindent Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent network\_comparison\vspace{3pt}}\\ \hline \hline \parbox{\wcA}{\vspace{3pt}\noindent 1832\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dual specificity mitogen-activated protein kinase kinase 7 (ec 2.7.1.-) (map kinase kinase 7) (mapkk 7) (mapk/erk kinase 7) (jnk activating kinase 2) (c-jun n-terminal kinase kinase 2) (jnk kinase 2) (jnkk 2). [source:swissprot;acc:o14733]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5633.44\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5997\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06454\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1833\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 5-formyltetrahydrofolate cyclo-ligase (ec 6.3.3.2) (5,10-methenyl- tetrahydrofolate synthetase) (methenyl-thf synthetase) (mthfs). [source:swissprot;acc:p49914]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6175.23\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6572.85\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06439\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1834\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 60s ribosomal protein l11. [source:swissprot;acc:p39026]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3593.24\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3375.93\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06437\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1835\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent transcription elongation factor a protein 2 (transcription elongation factor s-ii protein 2) (testis-specific s-ii) (transcription elongation factor tfiis.l). [source:swissprot;acc:q15560]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5019.3\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 5342.36\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.06436\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1836\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent transcription elongation factor a protein 1 (transcription elongation factor s-ii protein 1) (transcription elongation factor tfiis.o). [source:swissprot;acc:p23193]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1837\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent rad17 homolog isoform 1; rad17-like protein; cell cycle checkpoint protein (rad17); rf-c activator 1 homolog. [source:refseq;acc:nm\_002873]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5739.49\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6108.72\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.06433\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1838\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent atp-dependent dna helicase ii, 70 kda subunit (lupus ku autoantigen protein p70) (ku70) (70 kda subunit of ku antigen) (thyroid-lupus autoantigen) (tlaa) (ctc box binding factor 75 kda subunit) (ctcbf) (ctc75). [source:swissprot;acc:p12956]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1839\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent atp-dependent dna helicase ii, 80 kda subunit (lupus ku autoantigen protein p86) (ku86) (ku80) (86 kda subunit of ku antigen) (thyroid- lupus autoantigen) (tlaa) (ctc box binding factor 85 kda subunit) (ctcbf) (ctc85) (nuclear factor iv) (dna-repair protein xrcc5). [source:swissprot;acc:p13010]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1840\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent cholinephosphate cytidylyltransferase a (ec 2.7.7.15) (phosphorylcholine transferase a) (ctp:phosphocholine cytidylyltransferase a) (ct a) (cct a) (cct-alpha). [source:swissprot;acc:p49585]\vspace{3pt}}&\multirow{7}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 3591.95\vspace{3pt}}}&\multirow{7}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 3375.34\vspace{3pt}}}&\multirow{7}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.06417\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1841\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent fad synthetase. [source:refseq;acc:nm\_025207]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1842\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthethase 2 (paps synthethase 2) (papss 2) (sulfurylase kinase 2) (sk2) (sk 2) [includes: sulfate adenylyltransferase (ec 2.7.7.4) (sulfate adenylate transferase) (sat) (atp-sulfurylase); adenylylsulfate kinase (ec 2.7.1.25) (adenylylsulfate 3'-phosphotransferase) (aps kinase) (adenosine-5'-phosphosulfate 3'-phosphotransferase) (3'- phosphoadenosine-5'-phosphosulfate synthetase)]. [source:swissprot;acc:o95340]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1843\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ligatin (hepatocellular carcinoma-associated antigen 56). [source:swissprot;acc:p41214]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1844\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthethase 1 (paps synthethase 1) (papss 1) (sulfurylase kinase 1) (sk1) (sk 1) [includes: sulfate adenylyltransferase (ec 2.7.7.4) (sulfate adenylate transferase) (sat) (atp-sulfurylase); adenylylsulfate kinase (ec 2.7.1.25) (adenylylsulfate 3'-phosphotransferase) (aps kinase) (adenosine-5'-phosphosulfate 3'-phosphotransferase) (3'- phosphoadenosine-5'-phosphosulfate synthetase)]. [source:swissprot;acc:o43252]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1845\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent nadph-cytochrome p450 reductase (ec 1.6.2.4) (cpr) (p450r). [source:swissprot;acc:p16435]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1846\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent cholinephosphate cytidylyltransferase b (ec 2.7.7.15) (phosphorylcholine transferase b) (ctp:phosphocholine cytidylyltransferase b) (ct b) (cct b) (cct-beta). [source:swissprot;acc:q9y5k3]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1847\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent glutamine synthetase (ec 6.3.1.2) (glutamate--ammonia ligase). [source:swissprot;acc:p15104]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6215.55\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6613.46\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06402\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1848\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent heat shock protein hsp 90-alpha (hsp 86). [source:swissprot;acc:p07900]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5746.06\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6113.79\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.064\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1849\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent arginase ii, mitochondrial precursor (ec 3.5.3.1) (non-hepatic arginase) (kidney-type arginase). [source:swissprot;acc:p78540]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6267.93\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6668.72\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06394\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1850\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent protein kinase c binding protein 1 (rack7) (cutaneous t-cell lymphoma associated antigen se14-3) (ctcl tumor antigen se14-3) (zinc finger mynd domain containing protein 8). [source:swissprot;acc:q9ulu4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6158.6\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6551.94\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06387\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1851\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent adenovirus 5 e1a-binding protein (bs69 protein). [source:swissprot;acc:q15326]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6156.28\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6549.03\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0638\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1852\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent arginase 1 (ec 3.5.3.1) (liver-type arginase). [source:swissprot;acc:p05089]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6271.17\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6670.97\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06375\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1853\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent keratin associated protein 9.2. [source:refseq;acc:nm\_031961]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6076.65\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6463.64\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06368\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1854\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent keratin associated protein 4-10; keratin associated protein 4.10. [source:refseq;acc:nm\_033060]\vspace{3pt}}&\multirow{19}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 6076.66\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6463.14\vspace{3pt}}}&\multirow{27}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.0636\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1855\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent keratin associated protein 4-2; keratin associated protein 4.2. [source:refseq;acc:nm\_033062]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1856\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent keratin associated protein 4.3 (fragment). [source:sptrembl;acc:q9byr4]\vspace{3pt}}&&&\\\cline{1-2}\cline{4-4} \parbox{\wcA}{\vspace{3pt}\noindent 1857\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent keratin associated protein 2-4; keratin associated protein 2.4. [source:refseq;acc:nm\_033184]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 6463.15\vspace{3pt}}&\\\cline{1-2}\cline{4-4} \parbox{\wcA}{\vspace{3pt}\noindent 1858\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent keratin associated protein 4-14; keratin associated protein 4.14. [source:refseq;acc:nm\_033059]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6463.13\vspace{3pt}}}&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1859\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent keratin associated protein 4.9 (fragment). [source:sptrembl;acc:q9byq8]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1860\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent keratin associated protein 4-12; keratin associated protein 4.12. [source:refseq;acc:nm\_031854]\vspace{3pt}}&&&\\\cline{1-2}\cline{4-4} \parbox{\wcA}{\vspace{3pt}\noindent 1861\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent keratin associated protein 1.5. [source:refseq;acc:nm\_031957]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 6463.14\vspace{3pt}}&\\\cline{1-2}\cline{4-4} \parbox{\wcA}{\vspace{3pt}\noindent 1862\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent star-related lipid transfer protein 6 (stard6) (start domain- containing protein 6). [source:swissprot;acc:p59095]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 6463.13\vspace{3pt}}&\\\cline{1-2}\cline{4-4} \parbox{\wcA}{\vspace{3pt}\noindent 1863\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent keratin, ultra high-sulfur matrix protein b (uhs keratin b) (uhs kerb). [source:swissprot;acc:o75690]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6463.14\vspace{3pt}}}&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1864\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent keratin, ultra high-sulfur matrix protein a (uhs keratin a) (uhs kera). [source:swissprot;acc:p26371]\vspace{3pt}}&&&\\\cline{1-2}\cline{4-4} \parbox{\wcA}{\vspace{3pt}\noindent 1865\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent star-related lipid transfer protein 5 (stard5) (start domain- containing protein 5). [source:swissprot;acc:q9nsy2]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 6463.12\vspace{3pt}}&\\\cline{1-2}\cline{4-4} \parbox{\wcA}{\vspace{3pt}\noindent 1866\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent keratin associated protein 4.4. [source:refseq;acc:nm\_032524]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 6463.14\vspace{3pt}}&\\\cline{1-2}\cline{4-4} \parbox{\wcA}{\vspace{3pt}\noindent 1867\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent alpha-parvin (calponin-like integrin-linked kinase binding protein) (ch-ilkbp). [source:swissprot;acc:q9nvd7]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6463.12\vspace{3pt}}}&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1868\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent pinch protein (particularly interesting new cys-his protein) (lim and senescent cell antigen-like domains 1). [source:swissprot;acc:p48059]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1869\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent integrin-linked protein kinase 1 (ec 2.7.1.-) (ilk-1) (59 kda serine/threonine protein kinase) (p59ilk). [source:swissprot;acc:q13418]\vspace{3pt}}&&&\\\cline{1-2}\cline{4-4} \parbox{\wcA}{\vspace{3pt}\noindent 1870\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent star-related lipid transfer protein 4 (stard4) (start domain- containing protein 4). [source:swissprot;acc:q96dr4]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 6463.13\vspace{3pt}}&\\\cline{1-2}\cline{4-4} \parbox{\wcA}{\vspace{3pt}\noindent 1871\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ras suppressor protein 1 (rsu-1) (rsp-1). [source:swissprot;acc:q15404]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6463.12\vspace{3pt}}}&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1872\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ras-gtpase-activating protein binding protein 1 (gap sh3-domain binding protein 1) (g3bp-1). [source:swissprot;acc:q13283]\vspace{3pt}}&&&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 1873\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 40s ribosomal protein s11. [source:swissprot;acc:p04643]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3618.46\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3402.09\vspace{3pt}}&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 1874\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ras-gtpase-activating protein binding protein 2 (gap sh3-domain binding protein 2) (g3bp-2). [source:swissprot;acc:q9un86]\vspace{3pt}}&\multirow{7}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 6076.66\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent 6463.12\vspace{3pt}}&\\\cline{1-2}\cline{4-4} \parbox{\wcA}{\vspace{3pt}\noindent 1875\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent keratin associated protein 1-3; keratin associated protein 1.3. [source:refseq;acc:nm\_030966]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 6463.14\vspace{3pt}}&\\\cline{1-2}\cline{4-4} \parbox{\wcA}{\vspace{3pt}\noindent 1876\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent espin. [source:refseq;acc:nm\_031475]\vspace{3pt}}&&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6463.12\vspace{3pt}}}&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1877\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent cytochrome p450 2d6 (ec 1.14.14.1) (cypiid6) (p450-db1) (debrisoquine 4-hydroxylase). [source:swissprot;acc:p10635]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1878\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent pleckstrin homology domain containing, family c (with ferm domain) member 1; mitogen inducible 2; kindlin 2. [source:refseq;acc:nm\_006832]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1879\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent lim and senescent cell antigen-like domains 2; ilk-binding protein. [source:refseq;acc:nm\_017980]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1880\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent d(4) dopamine receptor (d(2c) dopamine receptor). [source:swissprot;acc:p21917]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1881\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent keratin associated protein 9-4; keratin associated protein 9.4. [source:refseq;acc:nm\_033191]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6076.68\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6462.56\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0635\vspace{3pt}}\\\hline nd{longtable}
Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.

- http://analysis.yellowcouch.org/