Scientific
MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis
These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.
MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.
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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX
Showing element 1732 to 1781 of 12912 in total
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
433\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
programmed cell death protein 8, mitochondrial precursor (ec 1.-.-.-) (apoptosis-inducing factor). [source:swissprot;acc:o95831]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
212.547\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
229.411\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07934\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
434\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
splicing factor 3b subunit 1 (spliceosome associated protein 155) (sap 155) (sf3b155) (pre-mrna splicing factor sf3b 155 kda subunit). [source:swissprot;acc:o75533]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
18306.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
22230.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21438\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
t-box transcription factor tbx6 (t-box protein 6). [source:swissprot;acc:o95947]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
212.547\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
229.411\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07934\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
thymic stromal co-transporter. [source:refseq;acc:nm\_033051]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
54.4927\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
49.6125\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09837\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquinol-cytochrome c reductase complex core protein i, mitochondrial precursor (ec 1.10.2.2). [source:swissprot;acc:p31930]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5246.38\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6037.37\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15077\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
435\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l19. [source:swissprot;acc:p14118]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.832\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
46.3081\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09769\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cytochrome b5 reductase b5r.2. [source:refseq;acc:nm\_016229]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
26598.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
32283.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21372\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
polymerase (dna directed) iota; rad30 (s. cerevisiae) homolog b; polymerase (dna-directed), iota. [source:refseq;acc:nm\_007195]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
221.522\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
205.286\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07909\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
proline synthetase co-transcribed bacterial homolog protein. [source:swissprot;acc:o94903]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
5233.86\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6022.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1507\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
436\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
arg/abl-interacting protein 2 isoform 2; arg binding protein 2. [source:refseq;acc:nm\_021069]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
6230.94\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7168.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15042\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cytochrome b5 reductase 1 (b5r.1). [source:refseq;acc:nm\_016243]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
26598.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
32283.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21372\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
paxillin. [source:swissprot;acc:p49023]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
221.522\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
205.286\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07909\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
putative glialblastoma cell differentiation-related; putative glialblastoma cell differentiation-related protein. [source:refseq;acc:nm\_016172]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
210.928\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
192.165\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09764\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
437\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cdc42-interacting protein 4 (thyroid receptor interacting protein 10) (trip-10). [source:swissprot;acc:q15642]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
209.921\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
226.459\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07878\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nadh-cytochrome b5 reductase (ec 1.6.2.2) (b5r). [source:swissprot;acc:p00387]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
26598.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
32283.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21372\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
suppressor of swi4 1 homolog (ssf-1) (peter pan homolog). [source:swissprot;acc:q9nq55]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3779.92\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4348.48\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15042\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein t86. [source:swissprot;acc:o00488]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
51.0466\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
56.024\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09751\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
438\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
arg/abl-interacting protein 2 isoform 2; arg binding protein 2. [source:refseq;acc:nm\_021069]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
28863.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
35031.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21371\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
bag-family molecular chaperone regulator-3 (bcl-2 binding athanogene- 3) (bag-3) (bcl-2-binding protein bis) (docking protein cair-1). [source:swissprot;acc:o95817]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.1867\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
60.5522\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09722\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
n-terminal acetyltransferase complex ard1 subunit homolog (ec 2.3.1.-). [source:swissprot;acc:p41227]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
233.723\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
216.674\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07869\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
swi/snf-related, matrix-associated, actin-dependent regulator of chromatin subfamily f member 1 (swi-snf complex protein p270) (b120). [source:swissprot;acc:o14497]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6252.58\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7192.88\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15039\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
439\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
40s ribosomal protein s9. [source:swissprot;acc:p46781]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
238.986\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
257.784\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07866\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cell division cycle protein 23; anaphase-promoting complex subunit 8. [source:refseq;acc:nm\_004661]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
51616.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
42588.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21198\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dok-like protein. [source:refseq;acc:nm\_024872]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
63.2134\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
69.352\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09711\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
programmed cell death protein 6 (probable calcium-binding protein alg- 2). [source:swissprot;acc:o75340]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
6252.58\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7192.88\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15039\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
440\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
calcium-dependent protease, small subunit (calpain regulatory subunit) (calcium-activated neutral proteinase) (canp). [source:swissprot;acc:p04632]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
6251.91\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7192.08\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15038\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dna topoisomerase ii, alpha isozyme (ec 5.99.1.3). [source:swissprot;acc:p11388]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
26348.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
31925.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21168\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
docking protein 2 (p56(dok-2)) (downstream of tyrosine kinase 2). [source:swissprot;acc:o60496]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
63.2134\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
69.352\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09711\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
highly expressed in cancer, rich in leucine heptad repeats. [source:refseq;acc:nm\_006101]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
231.802\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
249.983\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07843\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
441\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna topoisomerase ii, beta isozyme (ec 5.99.1.3). [source:swissprot;acc:q02880]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
26348.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
31924.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21161\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
docking protein 1 (p62(dok)) (downstream of tyrosine kinase 1) (pp62). [source:swissprot;acc:q99704]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
63.2134\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
69.352\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09711\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
grancalcin. [source:swissprot;acc:p28676]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6251.96\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7192.13\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15038\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
grb2-related adaptor protein. [source:swissprot;acc:q13588]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
223.457\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
207.222\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07835\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
442\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
centromere protein j; centrosomal p4.1-associated protein; lyst-interacting protein lip1; lag-3-associated protein. [source:refseq;acc:nm\_018451]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
51286.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
42334.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21146\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
e2a-pbx1-associated protein; putative 47 kda protein. [source:refseq;acc:nm\_020140]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
223.802\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
207.55\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0783\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sorcin (22 kda protein) (cp-22) (v19). [source:swissprot;acc:p30626]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6251.99\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7192.17\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15038\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tyrosine-protein kinase frk (ec 2.7.1.112) (nuclear tyrosine protein kinase rak). [source:swissprot;acc:p42685]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
63.2134\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
69.352\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09711\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
443\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l10a (csa-19). [source:swissprot;acc:p53025]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
50.1766\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
45.7369\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09707\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
brg1-binding protein eld/osa1; eld (eyelid)/osa protein. [source:refseq;acc:nm\_020732]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6252.27\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7192.51\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15038\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
neuron navigator 2 isoform l; retinoic acid inducible in neuroblastoma; pore membrane and/or filament interacting like protein 2; helicase helad1. [source:refseq;acc:nm\_145117]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
223.79\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
207.539\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0783\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
translation initiation factor if-2, mitochondrial precursor (if-2mt) (if-2(mt)). [source:swissprot;acc:p46199]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
26472.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
32067.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21135\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
444\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l10 (qm protein) (tumor suppressor qm) (laminin receptor homolog). [source:swissprot;acc:p27635]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.1636\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
45.7275\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09701\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
neuron navigator 1; neuron navigator-1; pore membrane and/or filament interacting like protein 3. [source:refseq;acc:nm\_020443]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
223.801\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
207.549\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0783\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
probable rrna processing protein ebp2 (ebna1 binding protein 2) (nucleolar protein p40). [source:swissprot;acc:q99848]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3758.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4322.87\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15011\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquitin-conjugating enzyme e2 e1 (ec 6.3.2.19) (ubiquitin-protein ligase e1) (ubiquitin carrier protein e1) (ubch6). [source:swissprot;acc:p51965]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
58831\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
48584.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21091\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
445\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ad24 protein. [source:refseq;acc:nm\_022451]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3753.71\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4315.95\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14978\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
neuron navigator 3; pore membrane and/or filament interacting like protein 1; steerin 3. [source:refseq;acc:nm\_014903]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
223.801\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
207.549\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0783\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ribosomal protein l10-like protein. [source:refseq;acc:nm\_080746]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.1635\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
45.7274\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09701\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquitin-conjugating enzyme e2e 3; ubiquitin carrier protein; ubiquitin-protein ligase. [source:refseq;acc:nm\_006357]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
58831\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
48584.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21091\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
446\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
eukaryotic translation initiation factor 4e (eif-4e) (eif4e) (mrna cap-binding protein) (eif-4f 25 kda subunit). [source:swissprot;acc:p06730]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
54.9019\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
60.2111\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0967\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/