Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Value Type Interaction Map description Network Comparison Type Rank Gene red Filtered green network_comparison
Results: HTML CSV LaTeX Showing element 173 to 222 of 3228 in total 
Value Type: Measured
Interaction Map: High confidence
Network Comparison Type: Divided
Filtered: 1

\def\wcA{0.16666666666667\textwidth}
\def\wcB{0.16666666666667\textwidth}
\def\wcC{0.16666666666667\textwidth}
\def\wcD{0.16666666666667\textwidth}
\def\wcE{0.16666666666667\textwidth}
\begin{longtable}{|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
actin binding lim protein 2. [source:refseq;acc:nm\_032432]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1012\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5791.82\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6340.86\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0948\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
actin, cytoplasmic 2 (gamma-actin). [source:swissprot;acc:p02571]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1354\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6036.22\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6512.64\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07893\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
actin-binding lim protein 1 isoform a; lim actin-binding protein 1; limatin; actin-binding lim protein. [source:refseq;acc:nm\_002313]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1020\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5791.82\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6340.86\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0948\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
actin-like protein 2 (actin-related protein 2). [source:swissprot;acc:o15142]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1778\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5386.37\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
5744.89\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.06656\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
actin-like protein 3 (actin-related protein 3) (actin-2). [source:swissprot;acc:p32391]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1783\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
actin-related protein 2/3 complex subunit 1a (sop2-like protein). [source:swissprot;acc:q92747]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1786\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
activated p21cdc42hs kinase. [source:refseq;acc:nm\_005781]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1055\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4757.46\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5198.91\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09279\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
activator of basal transcription 1; tata-binding protein-binding protein; basal transcriptional activator. [source:refseq;acc:nm\_013375]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1146\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6281.21\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6837.61\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08858\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
activator of camp-responsive element modulator (crem) in testis; lim protein act. [source:refseq;acc:nm\_020482]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2435\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3669.33\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3797.78\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.03501\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
activin a receptor, type ic; activin receptor-like kinase 7. [source:refseq;acc:nm\_145259]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2160\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5379.55\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5660.25\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05218\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
activin receptor type i precursor (ec 2.7.1.37) (actr-i) (serine/threonine-protein kinase receptor r1) (skr1) (activin receptor-like kinase 2) (alk-2) (tgf-b superfamily receptor type i) (tsr-i). [source:swissprot;acc:q04771]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
3050\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
acyl carrier protein, mitochondrial precursor (acp) (nadh-ubiquinone oxidoreductase 9.6 kda subunit) (ci-sdap). [source:swissprot;acc:o14561]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1917\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6858.84\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7287.27\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.06246\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
acyl-coa dehydrogenase, medium-chain specific, mitochondrial precursor (ec 1.3.99.3) (mcad). [source:swissprot;acc:p11310]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2612\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6380.61\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6476.19\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01498\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
acyl-coa dehydrogenase, short/branched chain specific, mitochondrial precursor (ec 1.3.99.-) (sbcad) (2-methyl branched chain acyl-coa dehydrogenase) (2-mebcad) (2-methylbutyryl-coenzyme a dehydrogenase) (2-methylbutyryl-coa dehydrogenase). [source:swissprot;acc:p45954]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1620\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6296.52\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6743.85\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07104\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
acyl-coa dehydrogenase, very-long-chain specific, mitochondrial precursor (ec 1.3.99.-) (vlcad). [source:swissprot;acc:p49748]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
380\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
12998.5\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
15138.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.16461\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
acyl-coenzyme a oxidase 1, peroxisomal (ec 1.3.3.6) (palmitoyl-coa oxidase) (aox). [source:swissprot;acc:q15067]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2035\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6920.71\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7315.59\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05706\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
acyl-coenzyme a oxidase 2, peroxisomal (ec 1.3.3.6) (branched-chain acyl-coa oxidase) (brcacox) (trihydroxycoprostanoyl-coa oxidase) (thccox) (thca-coa oxidase). [source:swissprot;acc:q99424]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2154\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6884.69\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7247.36\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05268\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
ad24 protein. [source:refseq;acc:nm\_022451]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
445\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3753.71\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4315.95\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.14978\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
adamts-9 precursor (ec 3.4.24.-) (a disintegrin and metalloproteinase with thrombospondin motifs 9) (adam-ts 9) (adam-ts9). [source:swissprot;acc:q9p2n4]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1530\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5916.05\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6350.53\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07344\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
adapter-related protein complex 1 beta 1 subunit (beta-adaptin 1) (adaptor protein complex ap-1 beta-1 subunit) (golgi adaptor ha1/ap1 adaptin beta subunit) (clathrin assembly protein complex 1 beta large chain). [source:swissprot;acc:q10567]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2064\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5548.79\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5861.31\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05632\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
adapter-related protein complex 1 gamma 1 subunit (gamma-adaptin) (adaptor protein complex ap-1 gamma-1 subunit) (golgi adaptor ha1/ap1 adaptin gamma-1 subunit) (clathrin assembly protein complex 1 gamma-1 large chain). [source:swissprot;acc:o43747]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2059\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5552.69\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5865.84\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.0564\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
adapter-related protein complex 1 gamma 2 subunit (gamma2-adaptin) (adaptor protein complex ap-1 gamma-2 subunit) (g2ad). [source:swissprot;acc:o75843]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2062\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5552.7\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5865.85\vspace{3pt}}&\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
adapter-related protein complex 1 sigma 1a subunit (sigma-adaptin 1a) (adaptor protein complex ap-1 sigma-1a subunit) (golgi adaptor ha1/ap1 adaptin sigma-1a subunit) (clathrin assembly protein complex 1 sigma- 1a small chain) (clathrin coat assembly protein ap19) (ha1 19 kda subunit) (sigma 1a subunit of ap-1 clathrin). [source:swissprot;acc:q00382]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2061\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5552.69\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
5865.84\vspace{3pt}}}&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
adapter-related protein complex 1 sigma 1b subunit (sigma-adaptin 1b) (adaptor protein complex ap-1 sigma-1b subunit) (golgi adaptor ha1/ap1 adaptin sigma-1b subunit) (clathrin assembly protein complex 1 sigma- 1b small chain) (sigma 1b subunit of ap-1 clathrin) (dc22). [source:swissprot;acc:p56377]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2058\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
adapter-related protein complex 1 sigma 1c subunit (sigma-adaptin 1c) (adaptor protein complex ap-1 sigma-1c subunit) (golgi adaptor ha1/ap1 adaptin sigma-1c subunit) (clathrin assembly protein complex 1 sigma- 1c small chain) (sigma 1c subunit of ap-1 clathrin). [source:swissprot;acc:q96pc3]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2060\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
adapter-related protein complex 2 beta 1 subunit (beta-adaptin) (plasma membrane adaptor ha2/ap2 adaptin beta subunit) (clathrin assembly protein complex 2 beta large chain) (ap105b). [source:swissprot;acc:p21851]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2050\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5556.36\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5870.11\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05647\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
adapter-related protein complex 3 beta 1 subunit (beta-adaptin 3a) (ap-3 complex beta-3a subunit) (beta-3a-adaptin). [source:swissprot;acc:o00203]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2623\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
6815.24\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6916.14\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.01481\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
adapter-related protein complex 3 beta 2 subunit (beta-adaptin 3b) (ap-3 complex beta-3b subunit) (beta-3b-adaptin) (neuron-specific vesicle coat protein beta-nap). [source:swissprot;acc:q13367]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2625\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
adapter-related protein complex 3 mu 1 subunit (mu-adaptin 3a) (ap-3 adapter complex mu3a subunit). [source:swissprot;acc:q9y2t2]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2444\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6478.14\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6695.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.03358\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
adapter-related protein complex 3 mu 2 subunit (clathrin coat assembly protein ap47 homolog 2) (clathrin coat associated protein ap47 homolog 2) (golgi adaptor ap-1 47 kda protein homolog 2) (ha1 47 kda subunit homolog 2) (clathrin assembly protein assembly protein complex 1 medium chain homolog 2) (p47b). [source:swissprot;acc:p53677]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2441\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6477.82\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6695.58\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.03362\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
adaptor protein with pleckstrin homology and src homology 2 domains. [source:refseq;acc:nm\_020979]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2870\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
adaptor-associated kinase 1. [source:refseq;acc:nm\_014911]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2282\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5783.73\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6048.91\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04585\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
adaptor-related protein complex 1, mu 1 subunit (mu-adaptin 1) (adaptor protein complex ap-1 mu-1 subunit) (golgi adaptor ha1/ap1 adaptin mu-1 subunit) (clathrin assembly protein assembly protein complex 1 medium chain 1) (clathrin coat assembly protein ap47) (clathrin coat associated protein ap47) (ap-mu chain family member mu1a). [source:swissprot;acc:q9bxs5]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2007\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5684.61\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6018.72\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05877\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
adaptor-related protein complex 1, mu 2 subunit (mu-adaptin 2) (adaptor protein complex ap-1 mu-2 subunit) (golgi adaptor ha1/ap1 adaptin mu-2 subunit) (clathrin assembly protein assembly protein complex 1 medium chain 2) (ap-mu chain family member mu1b). [source:swissprot;acc:q9y6q5]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2010\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5671.62\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6003.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05855\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
adenine phosphoribosyltransferase (ec 2.4.2.7) (aprt). [source:swissprot;acc:p07741]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2519\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5964.17\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6113.96\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02511\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
adenosine kinase (ec 2.7.1.20) (ak) (adenosine 5'-phosphotransferase). [source:swissprot;acc:p55263]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1581\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6376.12\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6833.59\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07175\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
adenosylhomocysteinase (ec 3.3.1.1) (s-adenosyl-l-homocysteine hydrolase) (adohcyase). [source:swissprot;acc:p23526]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
940\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5568.96\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6113.35\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09775\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
adenovirus 5 e1a-binding protein (bs69 protein). [source:swissprot;acc:q15326]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1851\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6156.28\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6549.03\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0638\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
adenylate cyclase, type v (ec 4.6.1.1) (atp pyrophosphate-lyase) (adenylyl cyclase) (fragment). [source:swissprot;acc:o95622]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
401\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5201.41\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
4479.76\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.16109\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
adenylate cyclase, type vi (ec 4.6.1.1) (atp pyrophosphate-lyase) (ca(2+)-inhibitable adenylyl cyclase). [source:swissprot;acc:o43306]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
400\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
adenylate kinase isoenzyme 2, mitochondrial (ec 2.7.4.3) (atp-amp transphosphorylase). [source:swissprot;acc:p54819]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2385\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3716.43\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3569.68\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04111\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
adenylate kinase isoenzyme 4, mitochondrial (ec 2.7.4.3) (atp-amp transphosphorylase). [source:swissprot;acc:p27144]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2228\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3650.82\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3484.97\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04759\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
adenylosuccinate lyase (ec 4.3.2.2) (adenylosuccinase) (asl) (asase). [source:swissprot;acc:p30566]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1640\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
7444.28\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7964\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.06981\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
adenylosuccinate synthase-like 1. [source:refseq;acc:nm\_152328]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
679\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6503.1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7282.94\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.11992\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
adenylosuccinate synthetase (ec 6.3.4.4) (imp--aspartate ligase) (adss) (ampsase). [source:swissprot;acc:p30520]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
680\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6503.03\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7282.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.11986\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
adenylyl cyclase-associated protein 1 (cap 1). [source:swissprot;acc:q01518]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1541\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5989.3\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6427.17\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07311\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
adenylyl cyclase-associated protein 2 (cap 2). [source:swissprot;acc:p40123]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1562\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5984.88\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6419.11\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07255\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
adhesion regulating molecule 1 precursor (110 kda cell membrane glycoprotein) (gp110). [source:swissprot;acc:q16186]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1884\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5826\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6195.48\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.06342\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
adipocyte plasma membrane-associated protein (bscv protein). [source:swissprot;acc:q9hdc9]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2723\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5603.24\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5583.64\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00351\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
adiponectin receptor 2. [source:refseq;acc:nm\_024551]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
317\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3153.1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3762.56\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.19329\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/