Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 1675 to 1724 of 12912 in total 
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
419\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cdc5-like; cdc5 (cell division cycle 5, s. pombe, homolog)-like; cell division cycle 5, s. pombe, homolog-like; cdc5-related protein. [source:refseq;acc:nm\_001253]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5493.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6350.19\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15603\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
low affinity immunoglobulin epsilon fc receptor (lymphocyte ige receptor) (fc-epsilon-rii) (cd23) (blast-2) (immunoglobulin e-binding factor). [source:swissprot;acc:p06734]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
233.539\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
253.197\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08417\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
420\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l24 (l30). [source:swissprot;acc:p38663]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
30924.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
37652.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21756\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cd209 antigen; dendritic cell-specific icam3-grabbing nonintegrin. [source:refseq;acc:nm\_021155]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
233.539\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
253.197\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08417\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dna polymerase epsilon, catalytic subunit a (ec 2.7.7.7) (dna polymerase ii subunit a). [source:swissprot;acc:q07864]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
51.7959\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
56.9253\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09903\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
hypoxanthine-guanine phosphoribosyltransferase (ec 2.4.2.8) (hgprt) (hgprtase). [source:swissprot;acc:p00492]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10235.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11830.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15589\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
421\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
c367g8.3 (novel protein similar to rpl23a (60s ribosomal protein l23a)) (60s ribosomal protein l23a like). [source:sptrembl;acc:q9br02]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.4666\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
45.9317\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09873\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cbl e3 ubiquitin protein ligase (ec 6.3.2.-) (signal transduction protein cbl) (proto-oncogene c-cbl). [source:swissprot;acc:p22681]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
36933\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
44953.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21717\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tuftelin-interacting protein 11 (hspc006). [source:swissprot;acc:q9ubb9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
223.202\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
205.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08403\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
vav-2 protein. [source:swissprot;acc:p52735]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6660.02\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7697.78\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15582\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
422\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l5. [source:swissprot;acc:p46777]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.4641\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
45.9293\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09873\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dna mismatch repair protein mlh3 (mutl protein homolog 3). [source:swissprot;acc:q9uhc1]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
25860\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
31475.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21715\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear rna export factor 5 (tap-like protein 1) (tapl-1). [source:swissprot;acc:q9h1b4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5206.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6010.04\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15425\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ras-related protein rab-37. [source:swissprot;acc:q96ax2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
240.287\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
260.193\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08284\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
423\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
epithelial-cadherin precursor (e-cadherin) (uvomorulin) (cadherin-1) (cam 120/80). [source:swissprot;acc:p12830]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.4663\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
45.9313\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09873\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear rna export factor 3 (tap-like protein 3) (tapl-3). [source:swissprot;acc:q9h4d5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5207.03\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6010.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15423\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ras-related protein rab-26. [source:swissprot;acc:q9ulw5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
240.287\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
260.193\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08284\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
signal transduction protein cbl-b (sh3-binding protein cbl-b). [source:swissprot;acc:q13191]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
36735.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
44689.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21652\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
424\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l23a. [source:swissprot;acc:p29316]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.4703\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
45.9373\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09868\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dna-directed rna polymerase ii 33 kda polypeptide (ec 2.7.7.6) (rpb3) (rna polymerase ii subunit 3) (rpb33) (rpb31). [source:swissprot;acc:p19387]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
240.287\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
260.193\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08284\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial processing peptidase alpha subunit, mitochondrial precursor (ec 3.4.24.64) (alpha-mpp) (p-55) (ha1523). [source:swissprot;acc:q10713]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
20259.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
24635.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21601\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear rna export factor 1 (tip associating protein) (tip-associated protein) (mrna export factor tap). [source:swissprot;acc:q9ubu9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5207.78\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6010.45\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15413\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
425\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
40s ribosomal protein s20. [source:swissprot;acc:p17075]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.0161\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
45.5318\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09849\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
max protein. [source:swissprot;acc:p25912]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
227.828\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
210.561\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.082\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial processing peptidase beta subunit, mitochondrial precursor (ec 3.4.24.64) (beta-mpp) (p-52). [source:swissprot;acc:o75439]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
20258.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
24634.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21601\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
saccharomyces cerevisiae nip7p homolog. [source:refseq;acc:nm\_016101]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3729.02\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4301.58\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15354\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
426\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dynactin 4. [source:refseq;acc:nm\_032486]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
233.142\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
252.253\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08197\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
n-terminal acetyltransferase complex ard1 subunit homolog (ec 2.3.1.-). [source:swissprot;acc:p41227]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.1073\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
60.5285\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09838\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
pef protein with a long n-terminal hydrophobic domain (peflin). [source:refseq;acc:nm\_012392]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5942.49\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6853.15\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15325\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquinol-cytochrome c reductase complex core protein i, mitochondrial precursor (ec 1.10.2.2). [source:swissprot;acc:p31930]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
20267.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
24644.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21596\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
427\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna-directed rna polymerase ii 23 kda polypeptide (ec 2.7.7.6) (rpb25) (xap4) (rpb5) (rpabc1). [source:swissprot;acc:p19388]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
239.977\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
259.525\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08146\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
neuronal acetylcholine receptor protein, alpha-7 chain precursor. [source:swissprot;acc:p36544]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
54.4927\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
49.6125\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09837\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
pms1 protein homolog 2 (dna mismatch repair protein pms2). [source:swissprot;acc:p54278]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
25380.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
30835.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21495\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase (ec 2.1.1.61). [source:swissprot;acc:o75648]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
11736.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
13531.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15297\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
428\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
adenylate cyclase, type vi (ec 4.6.1.1) (atp pyrophosphate-lyase) (ca(2+)-inhibitable adenylyl cyclase). [source:swissprot;acc:o43306]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
54.4927\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
49.6125\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09837\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
atp-dependent rna helicase mgc2835; atp-dependent rna helicase; apoptosis related protein apr-5; dead box helicase 97 kda. [source:refseq;acc:nm\_024072]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
253.852\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.808\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0811\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nucleolar gtp-binding protein 1 (chronic renal failure gene protein) (gtp-binding protein ngb). [source:swissprot;acc:q9bze4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3721.19\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4288.17\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15237\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
swi/snf-related, matrix-associated, actin-dependent regulator of chromatin subfamily f member 1 (swi-snf complex protein p270) (b120). [source:swissprot;acc:o14497]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
29101.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
35347\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21459\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
429\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
adenylate cyclase, type v (ec 4.6.1.1) (atp pyrophosphate-lyase) (adenylyl cyclase) (fragment). [source:swissprot;acc:o95622]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
54.4927\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
49.6125\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09837\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
polymerase (rna) iii (dna directed) (32kd). [source:refseq;acc:nm\_006467]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
239.709\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
259.038\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08064\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
programmed cell death protein 6 (probable calcium-binding protein alg- 2). [source:swissprot;acc:o75340]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
29101.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
35347\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21459\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
vinexin (sh3-containing adaptor molecule-1) (scam-1). [source:swissprot;acc:o60504]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6272.91\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7226.06\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15195\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
430\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
brg1-binding protein eld/osa1; eld (eyelid)/osa protein. [source:refseq;acc:nm\_020732]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
29098.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
35342.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21457\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
leucine-rich repeat-containing protein 15 precursor (hlib). [source:swissprot;acc:q8tf66]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
54.4927\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
49.6125\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09837\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor dp-2 (e2f dimerization partner 2). [source:swissprot;acc:q14188]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3804.09\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4379.37\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15123\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
u6 snrna-associated sm-like protein lsm5. [source:swissprot;acc:q9y4y9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
227.748\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
210.888\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07995\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
431\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dead (asp-glu-ala-asp) box polypeptide 31 isoform 1; dead/dexh helicase ddx31. [source:refseq;acc:nm\_022779]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3849.94\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4431.36\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15102\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
fem-1 homolog b; fem-1-like death receptor binding protein; fem-1 (c.elegans) homolog b. [source:refseq;acc:nm\_015322]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
54.4927\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
49.6125\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09837\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sorcin (22 kda protein) (cp-22) (v19). [source:swissprot;acc:p30626]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
29096\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
35338.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21456\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
trub pseudouridine (psi) synthase homolog 1. [source:refseq;acc:nm\_139169]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
236.245\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
255.113\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07987\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/