Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 1651 to 1700 of 12912 in total 
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
413\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
rd protein. [source:swissprot;acc:p18615]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.5489\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.535\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09922\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
vav proto-oncogene. [source:swissprot;acc:p15498]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
6644.99\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7707.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15994\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
414\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
autophagy protein 5-like (apg5-like) (apoptosis-specific protein). [source:swissprot;acc:q9h1y0]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
6744.05\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5815.13\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15974\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dolichol-phosphate mannosyltransferase (ec 2.4.1.83) (dolichol- phosphate mannose synthase) (dolichyl-phosphate beta-d- mannosyltransferase) (mannose-p-dolichol synthase) (mpd synthase) (dpm synthase). [source:swissprot;acc:o60762]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
22109.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
26989.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.22071\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
glutathione transferase omega 1 (ec 2.5.1.18) (gsto 1-1). [source:swissprot;acc:p78417]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.5489\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.535\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09922\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
katanin p60 subunit a 1. [source:refseq;acc:nm\_007044]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
232.431\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
252.238\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08522\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
415\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
androgen-induced 1; cgi-103 protein; androgen induced protein. [source:refseq;acc:nm\_016108]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.5489\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.535\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09922\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
katanin p80 subunit b 1; katanin (80 kda); katanin p80 (wd40-containing) subunit b 1. [source:refseq;acc:nm\_005886]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
232.382\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
252.166\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08514\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
vav-3 protein. [source:swissprot;acc:q9ukw4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6647.43\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7706.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15927\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
vinexin (sh3-containing adaptor molecule-1) (scam-1). [source:swissprot;acc:o60504]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
29160.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
35570.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21981\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
416\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
atp synthase b chain, mitochondrial precursor (ec 3.6.3.14). [source:swissprot;acc:p24539]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.5489\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.535\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09922\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dna-directed rna polymerase i 135 kda polypeptide (ec 2.7.7.6) (rna polymerase i subunit 2) (rpa135). [source:swissprot;acc:q9h9y6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
240.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
261.041\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08496\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
n-terminal acetyltransferase complex ard1 subunit homolog (ec 2.3.1.-). [source:swissprot;acc:p41227]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4509.54\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5223.95\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15842\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
prohibitin. [source:swissprot;acc:p35232]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
22841.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27856.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21953\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
417\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
bag-family molecular chaperone regulator-3 (bcl-2 binding athanogene- 3) (bag-3) (bcl-2-binding protein bis) (docking protein cair-1). [source:swissprot;acc:o95817]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4522.71\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5233.14\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15708\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
j domain containing protein 1. [source:swissprot;acc:q9ukb3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.5489\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.535\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09922\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
repressor of estrogen receptor activity; b-cell associated protein. [source:refseq;acc:nm\_007273]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
22841.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27856.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21953\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
set domain and mariner transposase fusion gene. [source:refseq;acc:nm\_006515]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
233.539\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
253.197\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08417\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
418\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
breast carcinoma amplified sequence 2; spliceosome associated protein, amplified in breast cancer. [source:refseq;acc:nm\_005872]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5493.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6350.19\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15603\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cd209 antigen-like; putative type ii membrane protein. [source:refseq;acc:nm\_014257]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
233.539\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
253.197\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08417\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
e-1 enzyme. [source:refseq;acc:nm\_021204]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
30903.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
37638.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21791\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sorting nexin 13 (rgs domain- and phox domain-containing protein) (rgs-px1). [source:swissprot;acc:q9y5w8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.5489\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.535\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09922\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
419\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
apolipoprotein a-i binding protein; apoa-i binding protein. [source:refseq;acc:nm\_144772]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
24832.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
30242.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21789\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ba127l20.1 (novel glutathione-s-transferase). [source:sptrembl;acc:q9h4y5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.5489\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.535\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09922\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cdc5-like; cdc5 (cell division cycle 5, s. pombe, homolog)-like; cell division cycle 5, s. pombe, homolog-like; cdc5-related protein. [source:refseq;acc:nm\_001253]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5493.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6350.19\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15603\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
low affinity immunoglobulin epsilon fc receptor (lymphocyte ige receptor) (fc-epsilon-rii) (cd23) (blast-2) (immunoglobulin e-binding factor). [source:swissprot;acc:p06734]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
233.539\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
253.197\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08417\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
420\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l24 (l30). [source:swissprot;acc:p38663]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
30924.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
37652.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21756\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cd209 antigen; dendritic cell-specific icam3-grabbing nonintegrin. [source:refseq;acc:nm\_021155]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
233.539\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
253.197\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08417\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dna polymerase epsilon, catalytic subunit a (ec 2.7.7.7) (dna polymerase ii subunit a). [source:swissprot;acc:q07864]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
51.7959\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
56.9253\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09903\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
hypoxanthine-guanine phosphoribosyltransferase (ec 2.4.2.8) (hgprt) (hgprtase). [source:swissprot;acc:p00492]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10235.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11830.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15589\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
421\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
c367g8.3 (novel protein similar to rpl23a (60s ribosomal protein l23a)) (60s ribosomal protein l23a like). [source:sptrembl;acc:q9br02]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.4666\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
45.9317\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09873\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cbl e3 ubiquitin protein ligase (ec 6.3.2.-) (signal transduction protein cbl) (proto-oncogene c-cbl). [source:swissprot;acc:p22681]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
36933\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
44953.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21717\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tuftelin-interacting protein 11 (hspc006). [source:swissprot;acc:q9ubb9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
223.202\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
205.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08403\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
vav-2 protein. [source:swissprot;acc:p52735]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6660.02\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7697.78\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15582\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
422\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l5. [source:swissprot;acc:p46777]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.4641\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
45.9293\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09873\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dna mismatch repair protein mlh3 (mutl protein homolog 3). [source:swissprot;acc:q9uhc1]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
25860\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
31475.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21715\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear rna export factor 5 (tap-like protein 1) (tapl-1). [source:swissprot;acc:q9h1b4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5206.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6010.04\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15425\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ras-related protein rab-37. [source:swissprot;acc:q96ax2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
240.287\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
260.193\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08284\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
423\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
epithelial-cadherin precursor (e-cadherin) (uvomorulin) (cadherin-1) (cam 120/80). [source:swissprot;acc:p12830]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.4663\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
45.9313\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09873\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear rna export factor 3 (tap-like protein 3) (tapl-3). [source:swissprot;acc:q9h4d5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5207.03\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6010.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15423\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ras-related protein rab-26. [source:swissprot;acc:q9ulw5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
240.287\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
260.193\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08284\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
signal transduction protein cbl-b (sh3-binding protein cbl-b). [source:swissprot;acc:q13191]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
36735.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
44689.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21652\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
424\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l23a. [source:swissprot;acc:p29316]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.4703\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
45.9373\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09868\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dna-directed rna polymerase ii 33 kda polypeptide (ec 2.7.7.6) (rpb3) (rna polymerase ii subunit 3) (rpb33) (rpb31). [source:swissprot;acc:p19387]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
240.287\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
260.193\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08284\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial processing peptidase alpha subunit, mitochondrial precursor (ec 3.4.24.64) (alpha-mpp) (p-55) (ha1523). [source:swissprot;acc:q10713]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
20259.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
24635.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21601\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear rna export factor 1 (tip associating protein) (tip-associated protein) (mrna export factor tap). [source:swissprot;acc:q9ubu9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5207.78\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6010.45\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15413\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
425\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
40s ribosomal protein s20. [source:swissprot;acc:p17075]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.0161\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
45.5318\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09849\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
max protein. [source:swissprot;acc:p25912]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
227.828\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
210.561\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.082\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial processing peptidase beta subunit, mitochondrial precursor (ec 3.4.24.64) (beta-mpp) (p-52). [source:swissprot;acc:o75439]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
20258.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
24634.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21601\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
saccharomyces cerevisiae nip7p homolog. [source:refseq;acc:nm\_016101]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3729.02\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4301.58\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15354\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/