Scientific
MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis
These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.
MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.
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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX
Showing element 1608 to 1657 of 12912 in total
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
402\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
replication protein a 32 kda subunit (rp-a) (rf-a) (replication factor-a protein 2). [source:swissprot;acc:p15927]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
207.908\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
226.218\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08807\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
403\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
fem-1 homolog b; fem-1-like death receptor binding protein; fem-1 (c.elegans) homolog b. [source:refseq;acc:nm\_015322]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5201.41\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4479.76\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16109\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
glycogen [starch] synthase, liver (ec 2.4.1.11). [source:swissprot;acc:p54840]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
39463.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
48362.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.22548\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nucleotide-binding protein 1 (nbp 1). [source:swissprot;acc:p53384]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
59.6834\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
65.6741\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10037\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
phosducin (phd) (33 kda phototransducing protein) (meka protein). [source:swissprot;acc:p20941]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
207.908\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
226.218\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08807\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
404\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
adenylosuccinate synthetase (ec 6.3.4.4) (imp--aspartate ligase) (adss) (ampsase). [source:swissprot;acc:p30520]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
26819.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
32855.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.22507\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dna repair protein rad52 homolog. [source:swissprot;acc:p43351]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
207.908\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
226.218\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08807\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
leucine-rich repeat protein lrrc3 precursor. [source:swissprot;acc:q9by71]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5201.41\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4479.76\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16109\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nucleotide binding protein 2 (nbp 2). [source:swissprot;acc:q9y5y2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
59.6834\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
65.6741\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10037\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
405\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
adenylosuccinate synthase-like 1. [source:refseq;acc:nm\_152328]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
26822.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
32858.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.22503\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
b-raf proto-oncogene serine/threonine-protein kinase (ec 2.7.1.-) (p94) (v-raf murine sarcoma viral oncogene homolog b1). [source:swissprot;acc:p15056]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
116.576\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
105.948\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10031\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
clathrin heavy chain 2 (clh-22). [source:swissprot;acc:p53675]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
207.931\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
226.209\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0879\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
laminin gamma-1 chain precursor (laminin b2 chain). [source:swissprot;acc:p11047]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5201.41\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4479.76\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16109\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
406\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l12. [source:swissprot;acc:p30050]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
49.9858\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
45.4433\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09996\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
serine protease htra2, mitochondrial precursor (ec 3.4.21.-) (high temperature requirement protein a2) (htra2) (omi stress-regulated endoprotease) (serine proteinase omi). [source:swissprot;acc:o43464]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
18995.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23245.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.22373\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
thymic stromal co-transporter. [source:refseq;acc:nm\_033051]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5201.41\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4479.76\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16109\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor dp-1 (e2f dimerization partner 1) (drtf1- polypeptide-1) (drtf1). [source:swissprot;acc:q14186]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
265.634\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
244.304\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08731\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
407\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
28s ribosomal protein s9, mitochondrial precursor (mrp-s9). [source:swissprot;acc:p82933]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
239.75\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
260.544\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08673\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l12 like protein. [source:sptrembl;acc:o60886]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
49.9856\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
45.4431\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09996\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
probable serine protease htra4 precursor (ec 3.4.21.-). [source:swissprot;acc:p83105]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
18995.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23244.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.22369\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
wiskott-aldrich syndrome protein interacting protein (wasp interacting protein) (prpl-2 protein). [source:swissprot;acc:o43516]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6603.41\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7664.65\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16071\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
408\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ccaat-box-binding transcription factor (ccaat-binding factor) (cbf). [source:swissprot;acc:q03701]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
255.112\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.804\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08649\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dj999l4.1 (novel protein similar to ribosomal protein l12 (rpl12)). [source:sptrembl;acc:q9nq02]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
49.9856\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
45.4432\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09996\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dok-like protein. [source:refseq;acc:nm\_024872]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6102.59\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7081.46\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1604\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
probable serine protease htra3 precursor (ec 3.4.21.-). [source:swissprot;acc:p83110]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
18995.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23244.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.22368\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
409\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
docking protein 2 (p56(dok-2)) (downstream of tyrosine kinase 2). [source:swissprot;acc:o60496]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6102.59\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7081.46\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1604\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial 60s ribosomal protein l3 (l3mt). [source:swissprot;acc:p09001]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.4409\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
45.8795\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09942\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
rna polymerase i associated factor 53. [source:refseq;acc:nm\_022490]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
241.045\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
261.874\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08641\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
serine protease htra1 precursor (ec 3.4.21.-) (l56). [source:swissprot;acc:q92743]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
18995.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23242.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.22359\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
410\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
crk-associated substrate (p130cas) (breast cancer anti-estrogen resistance 1 protein). [source:swissprot;acc:p56945]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
19546.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23881.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.22181\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
docking protein 1 (p62(dok)) (downstream of tyrosine kinase 1) (pp62). [source:swissprot;acc:q99704]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6102.59\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7081.46\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1604\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
phenylalanine-4-hydroxylase (ec 1.14.16.1) (pah) (phe-4- monooxygenase). [source:swissprot;acc:p00439]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.5489\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.535\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09922\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tfiih basal transcription factor complex p44 subunit (basic transcription factor 2 44 kda subunit) (btf2-p44) (general transcription factor iih polypeptide 2). [source:swissprot;acc:q13888]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
233.376\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
253.539\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0864\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
411\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
pp3111 protein. [source:refseq;acc:nm\_022156]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.5489\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.535\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09922\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
small nuclear ribonucleoprotein sm d3 (snrnp core protein d3) (sm-d3). [source:swissprot;acc:p43331]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
17861.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
21821.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.22174\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tfiih basal transcription factor complex p62 subunit (basic transcription factor 62 kda subunit) (btf2-p62) (general transcription factor iih polypeptide 1). [source:swissprot;acc:p32780]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
233.376\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
253.539\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0864\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tyrosine-protein kinase frk (ec 2.7.1.112) (nuclear tyrosine protein kinase rak). [source:swissprot;acc:p42685]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
6102.59\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7081.46\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1604\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
412\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
mki67 (fha domain) interacting nucleolar phosphoprotein; nucleolar phosphoprotein nopp34; nucleolar protein interacting with the fha domain of pki-67. [source:refseq;acc:nm\_032390]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
3594.31\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4169.95\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16015\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
syntaxin 18. [source:swissprot;acc:q9p2w9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.5489\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.535\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09922\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
t-complex protein 1, delta subunit (tcp-1-delta) (cct-delta) (stimulator of tar rna binding). [source:swissprot;acc:p50991]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
19556\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23891.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.22171\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (ec 1.10.2.2) (rieske iron-sulfur protein) (risp). [source:swissprot;acc:p47985]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
240.788\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
261.416\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08567\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
413\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna-directed rna polymerase i 40 kda polypeptide (ec 2.7.7.6) (rpa40) (rpa39). [source:swissprot;acc:o15160]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
240.913\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
261.45\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08525\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
enhancer of filamentation 1 (hef1) (crk-associated substrate-related protein) (cas-l) (casl) (pp105) (neural precursor cell expressed developmentally down-regulated 9). [source:swissprot;acc:q14511]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
19568.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23904.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.2216\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
rd protein. [source:swissprot;acc:p18615]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.5489\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.535\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09922\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
vav proto-oncogene. [source:swissprot;acc:p15498]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
6644.99\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7707.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15994\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
414\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
autophagy protein 5-like (apg5-like) (apoptosis-specific protein). [source:swissprot;acc:q9h1y0]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
6744.05\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5815.13\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15974\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dolichol-phosphate mannosyltransferase (ec 2.4.1.83) (dolichol- phosphate mannose synthase) (dolichyl-phosphate beta-d- mannosyltransferase) (mannose-p-dolichol synthase) (mpd synthase) (dpm synthase). [source:swissprot;acc:o60762]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
22109.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
26989.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.22071\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
glutathione transferase omega 1 (ec 2.5.1.18) (gsto 1-1). [source:swissprot;acc:p78417]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.5489\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.535\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09922\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
katanin p60 subunit a 1. [source:refseq;acc:nm\_007044]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
232.431\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
252.238\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08522\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
415\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
androgen-induced 1; cgi-103 protein; androgen induced protein. [source:refseq;acc:nm\_016108]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.5489\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.535\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09922\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/