Scientific
MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis
These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.
MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.
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Rank Gene Hugo description Network Comparison Type Value Type Interaction Map Filtered red network_comparison green
Results: HTML CSV LaTeX
Showing element 1580 to 1629 of 33156 in total
Network Comparison Type: Divided
Filtered: 1

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\def\wcB{0.11111111111111\textwidth}
\def\wcC{0.11111111111111\textwidth}
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\begin{longtable}{|c|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Interaction Map\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
green\vspace{3pt}}\\
\hline
\hline
\multirow{5}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
198\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
DGKD\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
diacylglycerol kinase, delta (ec 2.7.1.107) (diglyceride kinase) (dgk-delta) (dag kinase delta) (130 kda diacylglycerol kinase) (fragment). [source:swissprot;acc:q16760]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
6519.03\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.07336\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
6997.26\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
FOXP3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
forkhead box protein p3 (zinc finger protein jm2) (scurfin). [source:swissprot;acc:q9bzs1]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
263.191\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13741\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
231.394\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
GAD1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
glutamate decarboxylase, 67 kda isoform (ec 4.1.1.15) (gad-67) (67 kda glutamic acid decarboxylase). [source:swissprot;acc:q99259]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
59.6399\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.1486\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
51.9242\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
HSPB6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
heat-shock 20 kda like-protein p20. [source:swissprot;acc:o14558]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
219.606\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05123\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
208.904\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PTPRB\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein-tyrosine phosphatase beta precursor (ec 3.1.3.48) (r-ptp- beta). [source:swissprot;acc:p23467]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
71062.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.34373\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
95488.6\vspace{3pt}}\\\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
199\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
CRYAA\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
alpha crystallin a chain. [source:swissprot;acc:p02489]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
219.589\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05119\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
208.895\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
EGFL8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
palmitoyl-protein thioesterase 2 precursor (ec 3.1.2.22) (palmitoyl- protein hydrolase 2) (ppt-2) (g14). [source:swissprot;acc:q9umr5]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
242.735\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13729\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
276.059\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
HEYL\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
hairy/enhancer-of-split related with yrpw motif-like. [source:refseq;acc:nm\_014571]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
52187.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10778\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
47109.7\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PHB\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
prohibitin. [source:swissprot;acc:p35232]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
10642\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.07334\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
11422.5\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PPP2CA\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 2a, catalytic subunit, alpha isoform (ec 3.1.3.16) (pp2a-alpha) (replication protein c) (rp-c). [source:swissprot;acc:p05323]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
4916.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.26455\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3888.18\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PRSS16\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
thymus-specific serine protease precursor (ec 3.4.-.-). [source:swissprot;acc:q9nqe7]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
71062.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.34373\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
95488.6\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
STT3B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
source of immunodominant mhc-associated peptides; homolog of yeast stt3 gene. [source:refseq;acc:nm\_178862]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
61.2893\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.14842\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
70.3856\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
TPM4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
tropomyosin alpha 4 chain (tropomyosin 4) (tm30p1). [source:swissprot;acc:p07226]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
70.8512\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06097\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
75.1709\vspace{3pt}}\\\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
200\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
BCAR1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
crk-associated substrate (p130cas) (breast cancer anti-estrogen resistance 1 protein). [source:swissprot;acc:p56945]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4808.79\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.26315\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
6074.21\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
BRD3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
bromodomain-containing protein 3 (ring3-like protein). [source:swissprot;acc:q15059]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
54179.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10772\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
48910.9\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
CCDC47\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
gk001 protein. [source:refseq;acc:nm\_020198]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
71062.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.34373\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
95488.6\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
CRYAB\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
alpha crystallin b chain (alpha(b)-crystallin) (rosenthal fiber component). [source:swissprot;acc:p02511]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
219.543\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05111\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
208.868\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
EGFL7\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
egf-like-domain, multiple 7; neu1 protein. [source:refseq;acc:nm\_016215]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
242.718\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.1372\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
276.018\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
RINT1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rad50-interacting protein 1. [source:refseq;acc:nm\_021930]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
6926.74\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.07324\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7434.04\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
RPL27\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l27. [source:swissprot;acc:p08526]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
69.691\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06095\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
73.939\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
STT3A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
oligosaccharyl transferase stt3 subunit homolog (b5) (integral membrane protein 1) (tmc). [source:swissprot;acc:p46977]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
61.2893\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.14842\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
70.3856\vspace{3pt}}\\\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
201\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ARAF\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
a-raf proto-oncogene serine/threonine-protein kinase (ec 2.7.1.-) (a-raf-1) (proto-oncogene pks). [source:swissprot;acc:p10398]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
10392.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.07323\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
9683.56\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
CCT4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
t-complex protein 1, delta subunit (tcp-1-delta) (cct-delta) (stimulator of tar rna binding). [source:swissprot;acc:p50991]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
4810.22\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.26294\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
6075.04\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
CLSTN2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
calsyntenin-2 precursor. [source:swissprot;acc:q9h4d0]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
71033.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.3436\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
95440.2\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
CYC1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytochrome c1, heme protein, mitochondrial precursor (cytochrome c-1). [source:swissprot;acc:p08574]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
208.591\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.051\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
219.23\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
DDOST\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kda subunit precursor (ec 2.4.1.119) (oligosaccharyl transferase 48 kda subunit) (ddost 48 kda subunit). [source:swissprot;acc:p39656]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
61.2893\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.14842\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
70.3856\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
HEY1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
hairy/enhancer-of-split related with yrpw motif 1 (hairy and enhancer of split related-1) (hesr-1) (cardiovascular helix-loop-helix factor 2) (hes-related repressor protein 2 herp2). [source:swissprot;acc:q9y5j3]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
52176.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10771\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
47103.2\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
NCBP2L\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dj820b18.1 (similar to nuclear cap binding protein) (fragment). [source:sptrembl;acc:q8wwk2]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
71.1262\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06076\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
75.4476\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SF4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
splicing factor 4 isoform b; rna-binding protein. [source:refseq;acc:nm\_021164]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
240.133\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13601\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
211.382\vspace{3pt}}\\\cline{1-4}\cline{6-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
202\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
splicing factor 3b subunit 3 (spliceosome associated protein 130) (sap 130) (sf3b130) (pre-mrna splicing factor sf3b 130 kda subunit). [source:swissprot;acc:q15393]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
57.3527\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.14724\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
65.7973\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
CLSTN3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
calsyntenin-3 precursor. [source:swissprot;acc:q9bqt9]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
71030.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.34358\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
95434.8\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
GNG4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(i)/g(s)/g(o) gamma-4 subunit. [source:swissprot;acc:p50150]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
211.51\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05079\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
222.252\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
NCBP2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
20 kda nuclear cap binding protein (ncbp 20 kda subunit) (cbp20) (ncbp interacting protein 1) (nip1). [source:swissprot;acc:p52298]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
71.0652\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06067\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
75.377\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
NEDD9\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
enhancer of filamentation 1 (hef1) (crk-associated substrate-related protein) (cas-l) (casl) (pp105) (neural precursor cell expressed developmentally down-regulated 9). [source:swissprot;acc:q14511]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4812.01\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.26269\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
6076.09\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PGM3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
phosphoacetylglucosamine mutase (ec 5.4.2.3) (pagm) (acetylglucosamine phosphomutase) (n-acetylglucosamine-phosphate mutase) (phosphoglucomutase 3). [source:swissprot;acc:o95394]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
55537.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10765\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
50139.7\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
RAF1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
raf proto-oncogene serine/threonine-protein kinase (ec 2.7.1.-) (raf-1) (c-raf). [source:swissprot;acc:p04049]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
10391.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.0732\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
9682.99\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
TRPC4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
short transient receptor potential channel 4 (trpc4) (trp-related protein 4) (htrp-4) (htrp4). [source:swissprot;acc:q9ubn4]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
201.478\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13553\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
228.784\vspace{3pt}}\\\cline{1-4}\cline{6-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
203\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
hpaii tiny  fragments locus 9c. [source:refseq;acc:nm\_022727]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
20988.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.34263\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
15632.1\vspace{3pt}}\\\cline{3-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
sodium/hydrogen exchanger 6 (na(+)/h(+) exchanger 6) (nhe-6). [source:swissprot;acc:q92581]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
66.3503\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06066\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
70.3749\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
transcription factor dp-1 (e2f dimerization partner 1) (drtf1- polypeptide-1) (drtf1). [source:swissprot;acc:q14186]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
46.3291\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.14628\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
53.1063\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
ATG12\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
autophagy protein 12-like (apg12-like). [source:swissprot;acc:o94817]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
11757.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.25723\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
9352.11\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
GNG3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(i)/g(s)/g(o) gamma-3 subunit. [source:swissprot;acc:p29798]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
211.506\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05076\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
222.243\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SLU7\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
step ii splicing factor slu7. [source:refseq;acc:nm\_006425]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
9870.83\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.07305\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
10591.9\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
TBC1D10A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ebp50-pdz interactor of 64 kda (epi64 protein). [source:swissprot;acc:q9bxi6]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
201.515\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13516\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
228.752\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
TNXB\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
tenascin-x precursor (tn-x) (hexabrachion-like). [source:swissprot;acc:p22105]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
52164\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10763\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
47095.1\vspace{3pt}}\\\hline
\multirow{5}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
204\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
small nuclear ribonucleoprotein e (snrnp-e) (sm protein e) (sm-e) (sme). [source:swissprot;acc:p08578]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
4512.19\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.25339\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
5655.52\vspace{3pt}}\\\cline{4-4}\cline{6-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
55.8956\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.14434\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
63.9636\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
CPN2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
carboxypeptidase n 83 kda chain (carboxypeptidase n regulatory subunit) (fragment). [source:swissprot;acc:p22792]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
10374.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.07261\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
9672.48\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
GNG8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(i)/g(s)/g(o) gamma-8 subunit (gamma-9). [source:swissprot;acc:q9uk08]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
211.484\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05065\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
222.196\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
LEO1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
senescence downregulated leo1-like. [source:refseq;acc:nm\_138792]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
66.3503\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06066\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
70.3749\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Hugo is the HGNC identifier if it exists

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/