Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene Hugo Value Type description Network Comparison Type Filtered Interaction Map red green network_comparison
Results: HTML CSV LaTeX Showing element 63 to 112 of 502 in total 
Value Type: Ranked
Network Comparison Type: Divided
Filtered: 0
Interaction Map: High confidence

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\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
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\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
63\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
STT3A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
oligosaccharyl transferase stt3 subunit homolog (b5) (integral membrane protein 1) (tmc). [source:swissprot;acc:p46977]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8519.83\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11453\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.34428\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
64\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
LYZL1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
similar to lysozyme c-1 (1,4-beta-n-acylmuramidase c, ec 3.2.1.17). [source:refseq;acc:nm\_032517]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
15264\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
20387\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.33563\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
65\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
EP400\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
e1a binding protein p400; p400 swi2/snf2-related protein; cagh32 protein; trinucleotide repeat containing 12. [source:refseq;acc:nm\_015409]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7853.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
10406.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.32502\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
66\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
HS6ST2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
heparan sulfate 6-o-sulfotransferase 2. [source:refseq;acc:nm\_147174]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
11461\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
15180\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.32449\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
67\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
presenilin enhancer 2; hematopoietic stem/progenitor cells protein mds033. [source:refseq;acc:nm\_172341]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10793.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
14291.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.32408\vspace{3pt}}\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
68\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
purine nucleoside phosphorylase (ec 2.4.2.1) (inosine phosphorylase) (pnp). [source:swissprot;acc:p00491]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8932.56\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11823.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.32362\vspace{3pt}}\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
69\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
collagen alpha 5(iv) chain precursor. [source:swissprot;acc:p29400]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7704.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
10174.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.32051\vspace{3pt}}\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
70\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
protein regulator of cytokinesis 1; protein regulating cytokinesis 1. [source:refseq;acc:nm\_003981]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
13975.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
10593.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.31931\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
71\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
NUP43\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nucleoporin nup43 (p42). [source:swissprot;acc:q8nfh3]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4338.65\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5700.79\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.31395\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
72\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PGAM4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
putative phosphoglycerate mutase 3 (ec 5.4.2.1) (ec 5.4.2.4) (ec 3.1.3.13). [source:swissprot;acc:q8n0y7]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
4119\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
5397\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.31027\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
73\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
phosphoglycerate mutase 1 (ec 5.4.2.1) (ec 5.4.2.4) (ec 3.1.3.13) (phosphoglycerate mutase isozyme b) (pgam-b) (bpg-dependent pgam 1). [source:swissprot;acc:p18669]\vspace{3pt}}&&&\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
74\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
ataxin 2; olivopontocerebellar ataxia 2, autosomal dominant. [source:refseq;acc:nm\_002973]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6742.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8759.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.29915\vspace{3pt}}\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
75\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
nanos (fragment). [source:sptrembl;acc:q8wy41]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8782\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11350\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.29242\vspace{3pt}}\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
76\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
spectrin alpha chain, brain (spectrin, non-erythroid alpha chain) (alpha-ii spectrin) (fodrin alpha chain). [source:swissprot;acc:q13813]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3474\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2695\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.28905\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
77\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RCC1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
regulator of chromosome condensation (cell cycle regulatory protein). [source:swissprot;acc:p18754]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8821.32\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11366.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.28853\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
78\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
repressor of estrogen receptor activity; b-cell associated protein. [source:refseq;acc:nm\_007273]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7584.72\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9706.12\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.27969\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
79\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
NXF5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nuclear rna export factor 5 (tap-like protein 1) (tapl-1). [source:swissprot;acc:q9h1b4]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9465.55\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
12106.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.27901\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
80\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DTX1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
deltex homolog 1; hdx-1. [source:refseq;acc:nm\_004416]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9102.34\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11617.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.27636\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
81\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SEPHS2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
selenide,water dikinase 2 (ec 2.7.9.3) (selenophosphate synthetase 2) (selenium donor protein 2). [source:swissprot;acc:q99611]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
14463\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11356\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.2736\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
82\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dj681n20.2 (novel protein similar to ferritin, light polypeptide (ftl)). [source:sptrembl;acc:q9byw6]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7706.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6058\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.27212\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
83\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SNRPB\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
small nuclear ribonucleoprotein associated proteins b and b' (snrnp-b) (sm protein b/b') (sm-b/sm-b') (smb/smb'). [source:swissprot;acc:p14678]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
18359.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
14447.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.27077\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
84\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
STX1A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
syntaxin 1a (neuron-specific antigen hpc-1). [source:swissprot;acc:q16623]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
12460.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
15781\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.26647\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
85\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TBL2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transducin beta-like 2 protein (ws beta-transducin repeats protein) (ws-betatrp) (williams-beuren syndrome chromosome region 13 protein). [source:swissprot;acc:q9y4p3]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9688.47\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
12104.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.24934\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
86\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
high mobility group protein 1 (hmg-1). [source:swissprot;acc:p09429]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5677.96\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4546.87\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.24876\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
87\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
HMG1L1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dj579f20.1 (high-mobility group (nonhistone chromosomal) protein 1-like 1). [source:sptrembl;acc:q9nqj4]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5677.89\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4547.43\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.24859\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
88\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
HMG1L10\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
high mobility group protein 1-like 10 (hmg-1l10). [source:swissprot;acc:q9ugv6]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5677.86\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4547.66\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.24852\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
89\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SP100\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nuclear autoantigen sp-100 (speckled 100 kda) (nuclear dot-associated sp100 protein) (lysp100b). [source:swissprot;acc:p23497]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5677.58\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4549.85\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.24786\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
90\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
HMG4L\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
high mobility group protein 4-like (hmg-4l). [source:swissprot;acc:q9uj13]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5677.45\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4550.87\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.24755\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
91\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
BMP8A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
bone morphogenetic protein 8 precursor (bmp-8) (osteogenic protein 2) (op-2). [source:swissprot;acc:p34820]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
13841.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11127.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.24387\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
92\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dok-like protein. [source:refseq;acc:nm\_024872]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
17571\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
21783\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.23971\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
93\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PMS2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
pms1 protein homolog 2 (dna mismatch repair protein pms2). [source:swissprot;acc:p54278]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7739.47\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9580.95\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.23793\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
94\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TKTL1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transketolase-like 1 (ec 2.2.1.1) (transketolase 2) (tk 2) (transketolase related protein). [source:swissprot;acc:p51854]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
12946.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
10519.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.23067\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
95\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DUS1L\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
pp3111 protein. [source:refseq;acc:nm\_022156]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6185\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7603\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.22926\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
96\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
IMMP2L\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
imp2 inner mitochondrial membrane protease-like; inner mitochondrial membrane peptidase 2 like. [source:refseq;acc:nm\_032549]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
8335.82\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
10228.3\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.22703\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
97\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
microsomal signal peptidase 18 kda subunit (ec 3.4.-.-) (spase 18 kda subunit) (spc18) (endopeptidase sp18). [source:swissprot;acc:p21378]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
98\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
NR2E1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
orphan nuclear receptor nr2e1 (nuclear receptor tlx) (tailless homolog) (tll) (htll). [source:swissprot;acc:q9y466]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7234.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8858.94\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.22452\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
99\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ITGB1BP3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
muscle-specific beta 1 integrin binding protein. [source:refseq;acc:nm\_014446]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
12787.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
10454.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.22316\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
100\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
creatine kinase, ubiquitous mitochondrial precursor (ec 2.7.3.2) (u- mtck) (mia-ck) (acidic-type mitochondrial creatine kinase). [source:swissprot;acc:p12532]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9183.49\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11217.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.22151\vspace{3pt}}\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
101\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
dj947l8.1.1 (novel cub and sushi (scr repeat) domain protein) (fragment). [source:sptrembl;acc:q9h4v7]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
14548.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11915.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.221\vspace{3pt}}\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
102\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l18a. [source:swissprot;acc:q02543]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
12738.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
10437.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.22052\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
103\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
FMO3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dimethylaniline monooxygenase [n-oxide forming] 3 (ec 1.14.13.8) (hepatic flavin-containing monooxygenase 3) (fmo 3) (dimethylaniline oxidase 3) (fmo form 2) (fmo ii). [source:swissprot;acc:p31513]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7495.26\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9130.38\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21815\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
104\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
VBP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
prefoldin subunit 3 (von hippel-lindau binding protein 1) (vhl binding protein-1) (vbp-1) (hibbj46). [source:swissprot;acc:q15765]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9545\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7868\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21314\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
105\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
acyl-coa dehydrogenase, short/branched chain specific, mitochondrial precursor (ec 1.3.99.-) (sbcad) (2-methyl branched chain acyl-coa dehydrogenase) (2-mebcad) (2-methylbutyryl-coenzyme a dehydrogenase) (2-methylbutyryl-coa dehydrogenase). [source:swissprot;acc:p45954]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
17410.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
14360\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.21243\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
106\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TSFM\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
elongation factor ts, mitochondrial precursor (ef-ts) (ef-tsmt). [source:swissprot;acc:p43897]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
16290.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
13464.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.20987\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
107\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ATP1A2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
sodium/potassium-transporting atpase alpha-2 chain precursor (ec 3.6.3.9) (sodium pump 2) (na+/k+ atpase 2). [source:swissprot;acc:p50993]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
11853.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9808.86\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.20845\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
108\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PYCR1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
pyrroline-5-carboxylate reductase (ec 1.5.1.2) (p5cr) (p5c reductase). [source:swissprot;acc:p32322]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10585.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
12769.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.2063\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
109\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CSMD1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dj947l8.1.6 (novel cub and sushi (scr repeat) domain protein) (fragment). [source:sptrembl;acc:q9h4w2]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
14466.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
12031.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.20239\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
110\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TOP2B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dna topoisomerase ii, beta isozyme (ec 5.99.1.3). [source:swissprot;acc:q02880]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
12584.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
10470.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.20189\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
111\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein-tyrosine phosphatase, non-receptor type 1 (ec 3.1.3.48) (protein-tyrosine phosphatase 1b) (ptp-1b). [source:swissprot;acc:p18031]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9940.69\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11929\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.20002\vspace{3pt}}\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
112\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
40s ribosomal protein s26. [source:swissprot;acc:p02383]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
14269.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
17098\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1982\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Hugo is the HGNC identifier if it exists

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/