Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene Hugo description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 2477 to 2526 of 3228 in total 
Value Type: Ranked
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

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\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2477\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MRPL30\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mitochondrial ribosomal protein l30 isoform a. [source:refseq;acc:nm\_145212]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
216.177\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
216.801\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.00289\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2478\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PSMC6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
26s protease regulatory subunit s10b (proteasome subunit p42) (p44) (conserved atpase domain protein 44) (cadp44). [source:swissprot;acc:q92524]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2479\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PRR5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rho-gtpase-activating protein 8. [source:swissprot;acc:q9nsg0]\vspace{3pt}}&\multirow{9}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
218.093\vspace{3pt}}}&\multirow{9}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
218.72\vspace{3pt}}}&\multirow{9}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.00287\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2480\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ARHGAP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rho-gtpase-activating protein 1 (gtpase-activating protein rhoogap) (rho-related small gtpase protein activator) (cdc42 gtpase-activating protein) (p50-rhogap). [source:swissprot;acc:q07960]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2481\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
KLC2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
kinesin light chain 2 (klc 2). [source:swissprot;acc:q9h0b6]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2482\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
KIF5B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
kinesin heavy chain (ubiquitous kinesin heavy chain) (ukhc). [source:swissprot;acc:p33176]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2483\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
KIF5C\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
kinesin heavy chain isoform 5c (kinesin heavy chain neuron-specific 2). [source:swissprot;acc:o60282]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2484\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
KIF5A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
neuronal kinesin heavy chain (nkhc) (kinesin heavy chain isoform 5a) (kinesin heavy chain neuron-specific 1). [source:swissprot;acc:q12840]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2485\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
KLC1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
kinesin light chain 1 (klc 1). [source:swissprot;acc:q07866]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2486\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
GTF3A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transcription factor iiia (factor a) (tfiiia). [source:swissprot;acc:q92664]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2487\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
EXOC1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
exocyst complex component sec3 (bm-012). [source:swissprot;acc:q9nv70]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2488\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
hepatitis c virus core-binding protein 6; cervical cancer oncogene 3. [source:refseq;acc:nm\_023934]\vspace{3pt}}&\multirow{11}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
194.527\vspace{3pt}}}&\multirow{11}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
195.08\vspace{3pt}}}&\multirow{11}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.00284\vspace{3pt}}}\\\cline{1-1}\cline{3-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2489\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
dc11 protein. [source:refseq;acc:nm\_020186]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2490\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
APPBP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
amyloid beta precursor protein-binding protein 1; amyloid protein-binding protein 1. [source:refseq;acc:nm\_003905]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2491\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ALAS2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5-aminolevulinic acid synthase, erythroid-specific, mitochondrial precursor (ec 2.3.1.37) (delta-aminolevulinate synthase) (delta-ala synthetase) (alas-e). [source:swissprot;acc:p22557]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2492\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
UBE1C\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ubiquitin-activating enzyme e1c (uba3 homolog, yeast); ubiquitin-activating enzyme e1c (homologous to yeast uba3). [source:refseq;acc:nm\_003968]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2493\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
UBE1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ubiquitin-activating enzyme e1 (a1s9 protein). [source:swissprot;acc:p22314]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2494\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SLC25A12\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
calcium-binding mitochondrial carrier protein aralar1 (solute carrier family 25, member 12). [source:swissprot;acc:o75746]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2495\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
HHAT\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
melanoma antigen recognized by t cells 2. [source:refseq;acc:nm\_018194]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2496\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ALAS1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5-aminolevulinic acid synthase, nonspecific, mitochondrial precursor (ec 2.3.1.37) (delta-aminolevulinate synthase) (delta-ala synthetase) (alas-h). [source:swissprot;acc:p13196]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2497\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SLC25A13\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
calcium-binding mitochondrial carrier protein aralar2 (solute carrier family 25, member 13) (citrin). [source:swissprot;acc:q9ujs0]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2498\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
NDUFAB1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
acyl carrier protein, mitochondrial precursor (acp) (nadh-ubiquinone oxidoreductase 9.6 kda subunit) (ci-sdap). [source:swissprot;acc:o14561]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2499\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
NOB1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nin one binding protein; adenocarcinoma antigen recognized by t lymphocytes 4. [source:refseq;acc:nm\_014062]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
231.414\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
230.76\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00283\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2500\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
BIRC5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
baculoviral iap repeat-containing protein 5 (apoptosis inhibitor survivin) (apoptosis inhibitor 4). [source:swissprot;acc:o15392]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.949\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
219.552\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00275\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2501\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ZMYND8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein kinase c binding protein 1 (rack7) (cutaneous t-cell lymphoma associated antigen se14-3) (ctcl tumor antigen se14-3) (zinc finger mynd domain containing protein 8). [source:swissprot;acc:q9ulu4]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.398\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
216.809\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00272\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2502\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ZMYND11\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
adenovirus 5 e1a-binding protein (bs69 protein). [source:swissprot;acc:q15326]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.417\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
216.844\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00264\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2503\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PSMC1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
26s protease regulatory subunit 4 (p26s4). [source:swissprot;acc:q03527]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.581\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
216.137\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00258\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2504\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TNS1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
tensin. [source:refseq;acc:nm\_022648]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.238\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
217.682\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00255\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2505\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CBX5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
chromobox protein homolog 5 (heterochromatin protein 1 homolog alpha) (hp1 alpha) (antigen p25). [source:swissprot;acc:p45973]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
187.853\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
188.326\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00252\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2506\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
C10orf83\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
44050 protein. [source:refseq;acc:nm\_178832]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
151.386\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
151.009\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.0025\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2507\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PPP1R8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nuclear inhibitor of protein phosphatase-1 (nipp-1) (protein phosphatase 1, regulatory inhibitor subunit 8) [includes: activator of rna decay (ec 3.1.4.-) (ard-1)]. [source:swissprot;acc:q12972]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2508\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CEECAM1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cerebral cell adhesion molecule. [source:refseq;acc:nm\_016174]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
194.349\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
193.871\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.00247\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2509\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CBX3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
chromobox protein homolog 3 (heterochromatin protein 1 homolog gamma) (hp1 gamma) (modifier 2 protein) (hech). [source:swissprot;acc:q13185]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
187.902\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
188.366\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2510\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
GRPEL2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
grpe protein homolog 2, mitochondrial precursor (mt-grpe#2). [source:swissprot;acc:q8taa5]\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
234.384\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
234.948\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.00241\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2511\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
GRPEL1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
grpe protein homolog 1, mitochondrial precursor (mt-grpe#1) (hmge). [source:swissprot;acc:q9hav7]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2512\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SMARCD2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
swi/snf-related matrix-associated actin-dependent regulator of chromatin d2; rsc6p; mammalian chromatin remodeling complex brg1-associated factor 60b; swp73-like protein; chromatin remodeling complex baf60b subunit; swi/snf complex 60 kda subunit b. [source:refseq;acc:nm\_003077]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2513\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SMARCD3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
swi/snf-related matrix-associated actin-dependent regulator of chromatin d3; rsc6p; mammalian chromatin remodeling complex brg1-associated factor 60c; swp73-like protein; chromatin remodeling complex baf60c subunit; swi/snf complex 60 kda subunit c. [source:refseq;acc:nm\_003078]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2514\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SMARCD1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
swi/snf related, matrix associated, actin dependent regulator of chromatin subfamily d member 1 (swi/snf complex 60 kda subunit) (brg1- associated factor 60a). [source:swissprot;acc:q96gm5]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2515\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DFFB\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dna fragmentation factor 40 kda subunit (ec 3.-.-.-) (dff-40) (caspase-activated deoxyribonuclease) (caspase-activated dnase) (cad) (caspase-activated nuclease) (cpan). [source:swissprot;acc:o76075]\vspace{3pt}}&\multirow{6}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
215.835\vspace{3pt}}}&\multirow{6}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
216.341\vspace{3pt}}}&\multirow{12}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.00234\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2516\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ADAMTS9\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
adamts-9 precursor (ec 3.4.24.-) (a disintegrin and metalloproteinase with thrombospondin motifs 9) (adam-ts 9) (adam-ts9). [source:swissprot;acc:q9p2n4]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2517\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DFFA\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dna fragmentation factor alpha subunit (dna fragmentation factor 45 kda subunit) (dff-45) (inhibitor of cad) (icad). [source:swissprot;acc:o00273]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2518\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ANK3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ankyrin 3 (ank-3) (ankyrin g). [source:swissprot;acc:q12955]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2519\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ANK2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ankyrin 2 (brain ankyrin) (ankyrin b) (ankyrin, nonerythroid). [source:swissprot;acc:q01484]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2520\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ARL3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
adp-ribosylation factor-like protein 3. [source:swissprot;acc:p36405]\vspace{3pt}}&&&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2521\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nuclear receptor co-repressor/hdac3 complex subunit tblr1 (tbl1- related protein 1). [source:swissprot;acc:q9bzk7]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
201.96\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
201.488\vspace{3pt}}&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2522\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
UNC119\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
unc-119 protein homolog (retinal protein 4) (hrg4). [source:swissprot;acc:q13432]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.835\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
216.341\vspace{3pt}}&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2523\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
KPNB1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
importin beta-1 subunit (karyopherin beta-1 subunit) (nuclear factor p97) (importin 90). [source:swissprot;acc:q14974]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
201.96\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
201.488\vspace{3pt}}}&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2524\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TBL1X\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transducin beta-like 1x protein (transducin-beta-like 1, x-linked). [source:swissprot;acc:o60907]\vspace{3pt}}&&&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2525\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PSMD8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
26s proteasome non-atpase regulatory subunit 8 (26s proteasome regulatory subunit s14) (p31). [source:swissprot;acc:p48556]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.835\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
216.341\vspace{3pt}}&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2526\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TBL1Y\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transducin beta-like 1y protein (transducin-beta-like 1, y-linked). [source:swissprot;acc:q9bq87]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
201.96\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
201.488\vspace{3pt}}&\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Hugo is the HGNC identifier if it exists

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/