Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Value Type Interaction Map description Rank Network Comparison Type Gene Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 1286 to 1335 of 3228 in total 
Value Type: Measured
Interaction Map: High confidence
Network Comparison Type: Divided
Filtered: 1

\def\wcA{0.16666666666667\textwidth}
\def\wcB{0.16666666666667\textwidth}
\def\wcC{0.16666666666667\textwidth}
\def\wcD{0.16666666666667\textwidth}
\def\wcE{0.16666666666667\textwidth}
\begin{longtable}{|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
histone deacetylase 1 (hd1). [source:swissprot;acc:q13547]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
901\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5929.61\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6531.55\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10151\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
histone deacetylase 11 (hd11). [source:swissprot;acc:q96db2]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2326\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6773.67\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7075.51\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04456\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
histone deacetylase 2 (hd2). [source:swissprot;acc:q92769]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
897\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5929.48\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6531.48\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10153\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
histone deacetylase 3 (hd3) (rpd3-2). [source:swissprot;acc:o15379]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2813\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
histone deacetylase 4 (hd4). [source:swissprot;acc:p56524]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1414\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5813.88\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6263.96\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07741\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
histone deacetylase 5 (hd5) (antigen ny-co-9). [source:swissprot;acc:q9uql6]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1412\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5813.84\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6263.92\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07742\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
histone deacetylase 6 (hd6). [source:swissprot;acc:q9ubn7]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
3152\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
histone deacetylase 9 (hd9) (hd7b) (hd7). [source:swissprot;acc:q9ukv0]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1413\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5813.88\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6263.97\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07742\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
histone h2a.a (h2a/a) (h2a.2). [source:swissprot;acc:p28001]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2784\vspace{3pt}}&\multirow{6}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}}&\multirow{6}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}}&\multirow{6}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
histone h2a.c/d/i/n/p (h2a.1) (h2a/c) (h2a/d) (h2a/i) (h2a/n) (h2a/p) (h2a.1b). [source:swissprot;acc:p02261]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2767\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
histone h2a.e (h2a/e). [source:swissprot;acc:q99878]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2765\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
histone h2a.q (h2a/q) (h2a-gl101) (fragment). [source:swissprot;acc:q16777]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2769\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
histone h2a.x (h2a/x). [source:swissprot;acc:p16104]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2768\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
histone h2a; h2a histone family, member r. [source:refseq;acc:nm\_170745]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2852\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
histone h2b. [source:refseq;acc:nm\_175055]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
595\vspace{3pt}}&\multirow{7}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
3946.32\vspace{3pt}}}&\multirow{7}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
4475.47\vspace{3pt}}}&\multirow{7}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.13409\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
histone h2b.c (h2b/c). [source:swissprot;acc:q99880]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
592\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
histone h2b.d (h2b/d). [source:swissprot;acc:q99877]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
597\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
histone h2b.e (h2b/e). [source:swissprot;acc:q99879]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
600\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
histone h2b.q (h2b/q) (h2b-gl105). [source:swissprot;acc:q16778]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
593\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
histone h2b.s (h2b/s). [source:swissprot;acc:p57053]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
596\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
histone h3.1 (h3/a) (h3/c) (h3/d) (h3/f) (h3/h) (h3/i) (h3/j) (h3/k) (h3/l). [source:swissprot;acc:p16106]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
594\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
histone h3.3 (h3.a) (h3.b) (h3.3q). [source:swissprot;acc:p06351]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
654\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4088.63\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4593.43\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.12346\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
histone h3.4 (h3t) (h3/t) (h3/g). [source:swissprot;acc:q16695]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
598\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3946.32\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4475.47\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.13409\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
histone h4. [source:swissprot;acc:p02304]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2632\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6072.17\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6155.08\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01365\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
histone-lysine n-methyltransferase, h3 lysine-9 specific 1 (ec 2.1.1.43) (histone h3-k9 methyltransferase 1) (h3-k9-hmtase 1) (suppressor of variegation 3-9 homolog 1) (su(var)3-9 homolog 1). [source:swissprot;acc:o43463]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2032\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5060.82\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
5350.93\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.05732\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
histone-lysine n-methyltransferase, h3 lysine-9 specific 2 (ec 2.1.1.43) (histone h3-k9 methyltransferase 2) (h3-k9-hmtase 2) (suppressor of variegation 3-9 homolog 2) (su(var)3-9 homolog 2). [source:swissprot;acc:q9h5i1]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2030\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
hiv tat specific factor 1; cofactor required for tat activation of hiv-1 transcription. [source:refseq;acc:nm\_014500]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2563\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5291.65\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5187.78\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02002\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
hiv-1 rev binding protein 2; rev interacting protein. [source:refseq;acc:nm\_007043]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1212\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4077.89\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4428.28\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08592\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
hiv-1 rev binding protein-like; rev/rex activation domain binding protein-related. [source:refseq;acc:nm\_006076]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2561\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5291.65\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5187.78\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02002\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
hiv-1 tat interactive protein 2, 30kda; tat-interacting protein (30kd); hiv-1 tat interactive protein 2, 30 kda; hiv-1 tat interactive protein 2, 30 kd. [source:refseq;acc:nm\_006410]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2635\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
7197.82\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7291.66\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01304\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
hmg2 like. [source:refseq;acc:nm\_145205]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2799\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
homeobox prospero-like protein prox1 (prox 1). [source:swissprot;acc:q92786]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2110\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6916.14\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7295.24\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05481\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
homeobox protein barh-like 1. [source:swissprot;acc:q9hbu1]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2565\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
3964.71\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
4042.75\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.01968\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
homeobox protein barh-like 2. [source:swissprot;acc:q9umq3]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2570\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
homeobox protein cux-2 (cut-like 2) (fragment). [source:swissprot;acc:o14529]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
258\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6417.33\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7857.93\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.22449\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
homeobox protein dlx-2. [source:swissprot;acc:q07687]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1051\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
4757.46\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
5198.91\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.09279\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
homeobox protein dlx-3. [source:swissprot;acc:o60479]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1054\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
homeobox protein dlx-5. [source:swissprot;acc:p56178]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1052\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
homeobox protein engrailed-2 (hu-en-2). [source:swissprot;acc:p19622]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1143\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6281.21\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6837.61\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08858\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
homeobox protein hlx1 (homeobox protein hb24). [source:swissprot;acc:q14774]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
2597.5\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
698.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
3.71868\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
homeobox protein hox-a10 (hox-1h) (hox-1.8) (pl). [source:swissprot;acc:p31260]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
573\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6739.43\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7644.55\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.1343\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
homeobox protein hox-a4 (hox-1d) (hox-1.4). [source:swissprot;acc:q00056]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
344\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
20446.1\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
24136.4\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.18049\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
homeobox protein hox-a5 (hox-1c). [source:swissprot;acc:p20719]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
343\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
homeobox protein hox-a9 (hox-1g). [source:swissprot;acc:p31269]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
575\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6739.63\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7644.59\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.13427\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
homeobox protein hox-b4 (hox-2f) (hox-2.6). [source:swissprot;acc:p17483]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
338\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
20446.1\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
24136.4\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.18049\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
homeobox protein hox-b5 (hox-2a) (hho.c10) (hu-1). [source:swissprot;acc:p09067]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
342\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
homeobox protein hox-b9 (hox-2e) (hox-2.5). [source:swissprot;acc:p17482]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
574\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6739.61\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7644.58\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.13428\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
homeobox protein hox-c4 (hox-3e) (cp19). [source:swissprot;acc:p09017]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
337\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
20446.1\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
24136.4\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.18049\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
homeobox protein hox-c5 (hox-3d) (cp11). [source:swissprot;acc:q00444]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
339\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
homeobox protein hox-c6 (hox-3c) (hho.c8) (cp25). [source:swissprot;acc:p09630]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
340\vspace{3pt}}&&&\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/