Scientific
MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis
These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.
MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.
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Rank Gene Hugo description Network Comparison Type Value Type Interaction Map Filtered red network_comparison green
Results: HTML CSV LaTeX
Showing element 1258 to 1307 of 33156 in total
Network Comparison Type: Divided
Filtered: 1

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\def\wcB{0.11111111111111\textwidth}
\def\wcC{0.11111111111111\textwidth}
\def\wcD{0.11111111111111\textwidth}
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\def\wcF{0.11111111111111\textwidth}
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\begin{longtable}{|c|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Interaction Map\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
green\vspace{3pt}}\\
\hline
\hline
\multirow{7}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
158\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
DNAJC8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dnaj homolog subfamily c member 8 (splicing protein spf31) (hspc315). [source:swissprot;acc:o75937]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
219.838\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05988\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
207.417\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
GPSM2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mosaic protein lgn. [source:swissprot;acc:p81274]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
249.663\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.19466\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
298.263\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MAGEA6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
melanoma-associated antigen 6 (mage-6 antigen) (mage3b). [source:swissprot;acc:p43360]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
23693.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.29736\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
18263\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MTUS1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mitochondrial tumor suppressor gene 1; transcription factor mtsg1; at2 receptor-interacting protein 1; erythroid differentiation-related gene. [source:refseq;acc:nm\_020749]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
6434.71\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.08416\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
6976.28\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SEPT7\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
septin 7 (cdc10 protein homolog). [source:swissprot;acc:q16181]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
89182.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.40418\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
125229\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
STRN\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
striatin. [source:swissprot;acc:o43815]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
66.4354\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06851\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
70.987\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
WDR33\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
wd-repeat protein wdc146. [source:swissprot;acc:q9c0j8]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
57732.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.12381\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
51372.1\vspace{3pt}}\\\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
159\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
rna-binding protein. [source:refseq;acc:nm\_019027]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
52.7642\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.17318\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
61.9019\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
transgelin 2 (sm22-alpha homolog). [source:swissprot;acc:p37802]\vspace{3pt}}&&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
65.5823\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06818\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
70.0536\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
BRP44\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
brain protein 44. [source:swissprot;acc:o95563]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
10392.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.08349\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
11259.7\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
GGNBP2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
c3hc4-type zinc finger protein; likely ortholog of mouse dioxin inducible factor 3. [source:refseq;acc:nm\_024835]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
219.838\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05988\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
207.417\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
HINT1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
histidine triad nucleotide-binding protein 1 (adenosine 5'- monophosphoramidase) (protein kinase c inhibitor 1) (protein kinase c- interacting protein 1) (pkci-1). [source:swissprot;acc:p49773]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
22187.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.12001\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
19810.5\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
NDN\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
necdin. [source:swissprot;acc:q99608]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
23693.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.29736\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
18263\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
RGS17\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
regulator of g-protein signaling 17 (rgs17). [source:swissprot;acc:q9ugc6]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
249.663\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.19466\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
298.263\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SEPT6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
septin 6. [source:swissprot;acc:q14141]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
88953.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.40359\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
124854\vspace{3pt}}\\\cline{1-4}\cline{6-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
160\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
apobec-1 complementation factor isoform 1; apobec-1 stimulating protein; apo-b rna editing protein. [source:refseq;acc:nm\_014576]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
52.7642\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.17318\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
61.9019\vspace{3pt}}\\\cline{3-4}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein hox-c4 (hox-3e) (cp19). [source:swissprot;acc:p09017]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
173408\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.40126\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
242989\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
APC\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
adenomatous polyposis coli protein (apc protein). [source:swissprot;acc:p25054]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
222.31\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.0595\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
235.538\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
DCHS1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protocadherin 16 precursor (cadherin 19) (cadherin fibroblast 1). [source:swissprot;acc:q96jq0]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
65.7817\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06801\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
70.2555\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
GNAO1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(o), alpha subunit 1. [source:swissprot;acc:p09471]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
249.663\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.19466\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
298.263\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MAGED1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
melanoma-associated antigen d1 (mage-d1 antigen) (neurotrophin receptor-interacting mage homolog) (pro2292). [source:swissprot;acc:q9y5v3]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
23693.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.29736\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
18263\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MTHFR\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
methylenetetrahydrofolate reductase (ec 1.5.1.20). [source:swissprot;acc:p42898]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
10452.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.08304\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
11320.8\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PCSK5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
proprotein convertase subtilisin/kexin type 5 precursor (ec 3.4.21.-) (proprotein convertase pc5) (subtilisin/kexin-like protease pc5) (convertase pc5) (pc6) (hpc6). [source:swissprot;acc:q92824]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
54208.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.11969\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
48413.8\vspace{3pt}}\\\cline{1-4}\cline{6-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
161\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
APC2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
adenomatous polyposis coli like. [source:refseq;acc:nm\_005883]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
222.34\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.0594\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
235.547\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
HOXB4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein hox-b4 (hox-2f) (hox-2.6). [source:swissprot;acc:p17483]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
173408\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.40126\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
242989\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MAGEF1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
melanoma-associated antigen f1 (mage-f1 antigen). [source:swissprot;acc:q9hay2]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
23693.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.29736\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
18263\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PBLD\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mawd binding protein (unknown protein 32 from 2d-page of liver tissue). [source:swissprot;acc:p30039]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
60522.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.11893\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
67721\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
RAP1GAP\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rap1 gtpase-activating protein 1 (rap1gap). [source:swissprot;acc:p47736]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
249.663\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.19466\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
298.263\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SLC15A2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
oligopeptide transporter, kidney isoform (peptide transporter 2) (kidney h+/peptide cotransporter) (solute carrier family 15, member 2). [source:swissprot;acc:q16348]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
70.5717\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06801\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
75.371\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SLC16A5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
monocarboxylate transporter 6 (mct 6) (mct 5). [source:swissprot;acc:o15375]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
10351.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.08298\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
11210.8\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SYNCRIP\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ns1-associated protein 1. [source:refseq;acc:nm\_006372]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
52.7642\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.17318\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
61.9019\vspace{3pt}}\\\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
162\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
DAD1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
defender against cell death 1 (dad-1). [source:swissprot;acc:p46966]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
197.99\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05926\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
186.913\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
GABARAP\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
gaba(a) receptor-associated protein; gaba(a)-receptor-associated protein. [source:refseq;acc:nm\_007278]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
53479.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.11854\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
47812.1\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
HNRNPR\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
heterogeneous nuclear ribonucleoprotein r (hnrnp r). [source:swissprot;acc:o43390]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
52.7642\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.17318\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
61.9019\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
HOXC5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein hox-c5 (hox-3d) (cp11). [source:swissprot;acc:q00444]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
173408\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.40126\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
242989\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MAGEB6B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
melanoma antigen, family b, 6. [source:refseq;acc:nm\_173523]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
23693.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.29736\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
18263\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
NOSTRIN\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nostrin. [source:refseq;acc:nm\_052946]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
209.299\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.19058\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
249.187\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PSCD1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytohesin 1 (sec7 homolog b2-1). [source:swissprot;acc:q15438]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
12424.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.08298\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
11472.3\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SEPT8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
septin-like protein kiaa0202 (fragment). [source:swissprot;acc:q92599]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
98.7481\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06796\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
105.459\vspace{3pt}}\\\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
163\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein hox-c6 (hox-3c) (hho.c8) (cp25). [source:swissprot;acc:p09630]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
173408\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.40126\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
242989\vspace{3pt}}\\\cline{3-4}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
melanoma-associated antigen 4 (mage-4 antigen) (mage-x2) (mage-41). [source:swissprot;acc:p43358]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
23693.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.29736\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
18263\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
CPSF1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cleavage and polyadenylation specificity factor, 160 kda subunit (cpsf 160 kda subunit). [source:swissprot;acc:q10570]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
56828\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.11847\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
50808.5\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
EIF4G1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
eukaryotic translation initiation factor 4 gamma (eif-4-gamma) (eif- 4g) (eif4g) (p220). [source:swissprot;acc:q04637]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
52.7702\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.17285\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
61.8915\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SLC16A1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
monocarboxylate transporter 1 (mct 1). [source:swissprot;acc:p53985]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
10348.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.08293\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
11206.7\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SNF8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
eap30 subunit of ell complex. [source:refseq;acc:nm\_007241]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
209.299\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.19058\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
249.187\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
STRN4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
striatin 4 (zinedin). [source:swissprot;acc:q9nrl3]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
66.5155\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.06757\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
71.0097\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
VPS41\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
vacuolar assembly protein vps41 homolog (s53). [source:swissprot;acc:p49754]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
202.698\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05907\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
191.393\vspace{3pt}}\\\cline{1-4}\cline{6-8}
\multirow{3}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
164\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
BACH1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transcription regulator protein bach1 (btb and cnc homolog 1) (ha2303). [source:swissprot;acc:o14867]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
37094.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.11844\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
41487.9\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
HOXD4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein hox-d4 (hox-4b) (hox-5.1) (hho.c13). [source:swissprot;acc:p09016]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
173408\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.40126\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
242989\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MAGEA9\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
melanoma-associated antigen 9 (mage-9 antigen). [source:swissprot;acc:p43362]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
23693.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.29736\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
18263\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Hugo is the HGNC identifier if it exists

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/