Scientific
MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis
These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.
MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.
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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX
Showing element 1208 to 1257 of 3228 in total
Value Type: Measured
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.16666666666667\textwidth}
\def\wcB{0.16666666666667\textwidth}
\def\wcC{0.16666666666667\textwidth}
\def\wcD{0.16666666666667\textwidth}
\def\wcE{0.16666666666667\textwidth}
\begin{longtable}{|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1208\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
meiotic recombination protein dmc1/lim15 homolog. [source:swissprot;acc:q14565]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5913.73\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6423.98\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08628\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1209\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
bifunctional aminoacyl-trna synthetase [includes: glutamyl-trna synthetase (ec 6.1.1.17) (glutamate--trna ligase); prolyl-trna synthetase (ec 6.1.1.15) (proline--trna ligase)]. [source:swissprot;acc:p07814]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5420.87\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5887.53\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08609\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1210\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
trimethyllysine dioxygenase, mitochondrial precursor (ec 1.14.11.8) (epsilon-trimethyllysine 2-oxoglutarate dioxygenase) (tml-alpha- ketoglutarate dioxygenase) (tml hydroxylase) (tml dioxygenase) (tmld). [source:swissprot;acc:q9nvh6]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
6410.73\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6962.22\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.08603\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1211\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
gtp-binding protein era homolog (hera) (fragment). [source:swissprot;acc:o75616]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1212\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
hiv-1 rev binding protein 2; rev interacting protein. [source:refseq;acc:nm\_007043]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4077.89\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4428.28\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08592\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1213\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
branched-chain amino acid aminotransferase, cytosolic (ec 2.6.1.42) (bcat(c)) (eca39 protein). [source:swissprot;acc:p54687]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5890.62\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6396.53\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08588\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1214\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
mitogen-activated protein kinase kinase kinase 7 (ec 2.7.1.-) (transforming growth factor-beta-activated kinase 1) (tgf-beta- activated kinase 1). [source:swissprot;acc:o43318]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6001.16\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6515.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08577\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1215\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
branched-chain amino acid aminotransferase, mitochondrial precursor (ec 2.6.1.42) (bcat(m)) (placental protein 18) (pp18). [source:swissprot;acc:o15382]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5892.05\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6397.28\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08575\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1216\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
fibulin-2 precursor. [source:swissprot;acc:p98095]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
8670.59\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9412.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08561\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1217\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
cad protein [includes: glutamine-dependent carbamoyl-phosphate synthase (ec 6.3.5.5); aspartate carbamoyltransferase (ec 2.1.3.2); dihydroorotase (ec 3.5.2.3)]. [source:swissprot;acc:p27708]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6021.21\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6536.45\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08557\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1218\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
cyclin m4; ancient conserved domain protein 4. [source:refseq;acc:nm\_020184]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5736\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6226.52\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.08552\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
1219\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
tcd37 homolog; prune. [source:refseq;acc:nm\_021222]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5735.95\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6226.46\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1220\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
cyclin m3; ancient conserved domain protein 3. [source:refseq;acc:nm\_017623]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5735.65\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6226.13\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.08551\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
1221\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
cyclin m2; ancient conserved domain protein 2. [source:refseq;acc:nm\_017649]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5736.34\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6226.88\vspace{3pt}}&\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
1222\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
cyclin m1; ancient conserved domain protein 1. [source:refseq;acc:nm\_020348]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5735.74\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6226.23\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1223\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
transketolase-like 1 (ec 2.2.1.1) (transketolase 2) (tk 2) (transketolase related protein). [source:swissprot;acc:p51854]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6011.44\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6524.55\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08536\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1224\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
splicing factor 3b subunit 4 (spliceosome associated protein 49) (sap 49) (sf3b50) (pre-mrna splicing factor sf3b 49 kda subunit). [source:swissprot;acc:q15427]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4331.35\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4700.91\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08532\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1225\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
apurinic/apyrimidinic endonuclease 2; apurinic/apyrimidinic endonuclease-like 2; apex nuclease-like 2. [source:refseq;acc:nm\_014481]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5546.5\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6019.57\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08529\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1226\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
tyrosinase-related gene segment, exon 5 (fragment). [source:sptrembl;acc:q15677]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5997.24\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6508.62\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.08527\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
1227\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
pinin, desmosome associated protein; pinin. [source:refseq;acc:nm\_002687]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5973.95\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6483.32\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1228\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dopachrome tautomerase precursor (ec 5.3.3.12) (dt) (dct) (dopachrome delta-isomerase) (tyrosinase-related protein 2) (trp-2) (trp2). [source:swissprot;acc:p40126]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5998.58\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6509.65\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0852\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1229\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
5,6-dihydroxyindole-2-carboxylic acid oxidase precursor (ec 1.14.18.-) (dhica oxidase) (tyrosinase-related protein 1) (trp-1) (trp1) (trp) (catalase b) (glycoprotein-75) (melanoma antigen gp75). [source:swissprot;acc:p17643]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5998.69\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6509.74\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08519\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1230\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dystrobrevin binding protein 1; dysbindin. [source:refseq;acc:nm\_032122]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5678.02\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6161.65\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08518\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1231\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
probable dimethyladenosine transferase (ec 2.1.1.-) (s- adenosylmethionine-6-n',n'-adenosyl(rrna) dimethyltransferase) (18s rrna dimethylase). [source:swissprot;acc:q9unq2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5132.68\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5569.54\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08511\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1232\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear factor, interleukin 3 regulated. [source:refseq;acc:nm\_005384]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5869.24\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6367.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08494\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1233\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
tyrosinase precursor (ec 1.14.18.1) (monophenol monooxygenase) (tumor rejection antigen ab) (sk29-ab) (lb24-ab). [source:swissprot;acc:p14679]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6004.54\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6514.24\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08489\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1234\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
similar to ecotropic viral integration site 5; neuroblastoma stage 4s gene. [source:refseq;acc:nm\_145245]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5807.83\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6300.47\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.08482\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1235\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ecotropic viral integration site 5; neuroblastoma stage 4s gene. [source:refseq;acc:nm\_005665]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1236\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
p10-binding protein. [source:refseq;acc:nm\_024491]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5594.18\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6067.49\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08461\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1237\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
tsc22-related inducible leucine zipper protein 2 (tsc-22-like protein thg-1). [source:swissprot;acc:q9y3q8]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5873.56\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6370.31\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.08457\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1238\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
sphingolipid delta 4 desaturase; membrane fatty acid (lipid) desaturase; dihydroceramide desaturase. [source:refseq;acc:nm\_003676]\vspace{3pt}}&&&\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
1239\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
daz associated protein 1 isoform b; deleted in azoospermia associated protein 1. [source:refseq;acc:nm\_018959]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5654.53\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6132.76\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1240\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
retinoic acid induced 17; pias-like protein hzimp10. [source:refseq;acc:nm\_020338]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5654.54\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6132.69\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08456\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1241\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
26s proteasome non-atpase regulatory subunit 2 (26s proteasome regulatory subunit s2) (26s proteasome subunit p97) (tumor necrosis factor type 1 receptor associated protein 2) (55.11 protein). [source:swissprot;acc:q13200]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6436.19\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6980.13\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08451\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1242\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquitin-conjugating enzyme e2 e1 (ec 6.3.2.19) (ubiquitin-protein ligase e1) (ubiquitin carrier protein e1) (ubch6). [source:swissprot;acc:p51965]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
11143.5\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
10276.3\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.08439\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1243\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquitin-conjugating enzyme e2e 3; ubiquitin carrier protein; ubiquitin-protein ligase. [source:refseq;acc:nm\_006357]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1244\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
sirtuin 7; sir2-related protein type 7; sirtuin type 7; sirtuin (silent mating type information regulation 2, s.cerevisiae, homolog) 7; silent mating type information regulation 2, s.cerevisiae, homolog 7; sirtuin silent mating type information regulation 2 homolog 7 (s. cerevisiae). [source:refseq;acc:nm\_016538]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
4835.55\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
5243.23\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.08431\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1245\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
casein kinase ii beta chain (ck ii) (phosvitin) (g5a). [source:swissprot;acc:p13862]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1246\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
p53-related protein kinase (ec 2.7.1.-) (nori-2). [source:swissprot;acc:q96s44]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5346.11\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5796.72\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08429\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1247\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
protein-tyrosine phosphatase, non-receptor type 1 (ec 3.1.3.48) (protein-tyrosine phosphatase 1b) (ptp-1b). [source:swissprot;acc:p18031]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6278.76\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6807.51\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08421\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1248\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
protein-tyrosine phosphatase, non-receptor type 2 (ec 3.1.3.48) (t- cell protein-tyrosine phosphatase) (tcptp). [source:swissprot;acc:p17706]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6275.86\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6803.95\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08415\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1249\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
trans-prenyltransferase; polyprenyl pyrophosphate synthetase. [source:refseq;acc:nm\_014317]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4413.55\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4784.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08407\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1250\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
huntingtin interacting protein 1 (hip-i). [source:swissprot;acc:o00291]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
10733.4\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9902.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0839\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1251\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
regulator of chromosome condensation (cell cycle regulatory protein). [source:swissprot;acc:p18754]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
8618.32\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
9340.98\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.08385\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1252\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger homeobox protein 1b (smad interacting protein 1) (smadip1) (hrihfb2411). [source:swissprot;acc:o60315]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1253\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor 8 (nil-2-a zinc finger protein) (negative regulator of il2). [source:swissprot;acc:p37275]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1254\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
goodpasture antigen-binding protein (ec 2.7.1.37) (gpbp) (collagen type iv alpha 3 binding protein) (star-related lipid transfer protein 11) (stard11) (start domain-containing protein 11). [source:swissprot;acc:q9y5p4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
10725.6\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9896.32\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0838\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1255\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 4 (ec 3.1.3.16) (pp4) (protein phosphatase x) (pp-x). [source:swissprot;acc:p33172]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5438.66\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5893.87\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.0837\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
1256\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
huntingtin interacting protein 1 related (hip1-related) (hip 12). [source:swissprot;acc:o75146]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
10719\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9891.08\vspace{3pt}}&\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
1257\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
immunoglobulin-binding protein 1 (cd79a-binding protein 1) (b cell signal transduction molecule alpha 4) (alpha 4 protein). [source:swissprot;acc:p78318]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5438.66\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5893.87\vspace{3pt}}&\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/