Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 1162 to 1211 of 3228 in total 
Value Type: Measured
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.16666666666667\textwidth}
\def\wcB{0.16666666666667\textwidth}
\def\wcC{0.16666666666667\textwidth}
\def\wcD{0.16666666666667\textwidth}
\def\wcE{0.16666666666667\textwidth}
\begin{longtable}{|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1162\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
nemo-like kinase; likely ortholog of mouse nemo like kinase. [source:refseq;acc:nm\_016231]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5832.13\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6343.59\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.0877\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1163\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
elks protein. [source:refseq;acc:nm\_015064]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1164\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
sodium/iodide cotransporter (na(+)/i(-) cotransporter) (sodium-iodide symporter) (na+/i-symporter). [source:swissprot;acc:q92911]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6600.36\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7178.84\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08764\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1165\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
kidney and liver proline oxidase 1. [source:refseq;acc:nm\_021232]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6604.44\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7183.07\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08761\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1166\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
solute carrier family 5 (iodide transporter), member 8; apical iodide transporter. [source:refseq;acc:nm\_145913]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6606.3\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7185.01\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0876\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1167\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
sodium-dependent multivitamin transporter (na(+)-dependent multivitamin transporter). [source:swissprot;acc:q9y289]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6607.68\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7186.45\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08759\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1168\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
mitotic checkpoint protein bub3. [source:swissprot;acc:o43684]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5470.44\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
5949.49\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.08757\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1169\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 207. [source:swissprot;acc:o43670]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1170\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquitin-like protein smt3a. [source:swissprot;acc:p55854]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5826.34\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6335.98\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.08747\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
1171\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquitin-like protein smt3b (sentrin 2) (hsmt3). [source:swissprot;acc:p55855]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5826.29\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6335.93\vspace{3pt}}&\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
1172\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
acrc protein; putative nuclear protein. [source:refseq;acc:nm\_052957]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5826.32\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6335.95\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1173\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
chaperone-activity of bc1 complex-like, mitochondrial precursor (chaperone-abc1-like). [source:swissprot;acc:q8ni60]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5799.35\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6305.95\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.08735\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
1174\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
cda11 protein. [source:refseq;acc:nm\_032026]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5874.11\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6387.23\vspace{3pt}}&\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
1175\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
aarf domain containing kinase 2; putative ubiquinone biosynthesis protein aarf. [source:refseq;acc:nm\_052853]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5799.35\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6305.95\vspace{3pt}}}&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1176\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
aarf domain containing kinase 4. [source:refseq;acc:nm\_024876]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1177\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
aarf domain containing kinase 1. [source:refseq;acc:nm\_020421]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1178\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
pepsin a precursor (ec 3.4.23.1). [source:swissprot;acc:p00790]\vspace{3pt}}&\multirow{12}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
4392.63\vspace{3pt}}}&\multirow{12}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
4776.19\vspace{3pt}}}&\multirow{12}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.08732\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1179\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
solute carrier family 20 (phosphate transporter), member 2; glvr-2; pit-2; gibbon ape leukemia virus receptor 2; murine leukemia virus, amphotropic; receptor. [source:refseq;acc:nm\_006749]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1180\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
farnesyl pyrophosphate synthetase (fpp synthetase) (fps) (farnesyl diphosphate synthetase) [includes: dimethylallyltransferase (ec 2.5.1.1); geranyltranstransferase (ec 2.5.1.10)]. [source:swissprot;acc:p14324]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1181\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
protocadherin 15 precursor. [source:swissprot;acc:q96qu1]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1182\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
solute carrier family 20 (phosphate transporter), member 1; glvr-1; pit-1; gibbon ape leukemia virus receptor 1. [source:refseq;acc:nm\_005415]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1183\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
lipocalin-interacting membrane receptor. [source:refseq;acc:nm\_018113]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1184\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein gli1 (glioma-associated oncogene) (oncogene gli). [source:swissprot;acc:p08151]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1185\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
suppressor of fused. [source:refseq;acc:nm\_016169]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1186\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein gli3. [source:swissprot;acc:p10071]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1187\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
limb region 1 protein; limb region 1. [source:refseq;acc:nm\_022458]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1188\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
gastricsin precursor (ec 3.4.23.3) (pepsinogen c). [source:swissprot;acc:p20142]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1189\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein gli2 (tax helper protein). [source:swissprot;acc:p10070]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1190\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
mitotic spindle assembly checkpoint protein mad2a (mad2-like 1) (hsmad2). [source:swissprot;acc:q13257]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
6599.84\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
7174.29\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.08704\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1191\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
probable cation-transporting atpase 1 (ec 3.6.1.-). [source:swissprot;acc:q9nq11]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1192\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
tata box binding protein (transcription initiation factor tfiid) (tata-box factor) (tata sequence-binding protein) (tbp). [source:swissprot;acc:p20226]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1193\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
putative eukaryotic translation initiation factor 3 subunit (eif-3) (fragment). [source:swissprot;acc:o75153]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5464.9\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5940.16\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08697\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1194\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
t-complex protein 1, epsilon subunit (tcp-1-epsilon) (cct-epsilon). [source:swissprot;acc:p48643]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
8425.35\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7751.57\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08692\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1195\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
similar to trna synthetase class ii. [source:refseq;acc:nm\_152268]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5439.56\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5911.24\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08671\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1196\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
kappa b-ras 1. [source:refseq;acc:nm\_020345]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5721.19\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6217.2\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.0867\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1197\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
i-kappa-b-interacting ras-like protein 2. [source:refseq;acc:nm\_017595]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1198\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
snare associated protein snapin. [source:refseq;acc:nm\_012437]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1199\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
serine hydroxymethyltransferase, mitochondrial precursor (ec 2.1.2.1) (serine methylase) (glycine hydroxymethyltransferase) (shmt). [source:swissprot;acc:p34897]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5449.48\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5921.77\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08667\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1200\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
xylulokinase homolog; xylulokinase (h. influenzae) homolog. [source:refseq;acc:nm\_005108]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5950.27\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6465.72\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08663\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1201\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
thymidylate kinase (ec 2.7.4.9) (dtmp kinase). [source:swissprot;acc:p23919]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6042.31\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6565.03\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08651\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1202\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
porphobilinogen deaminase (ec 4.3.1.8) (hydroxymethylbilane synthase) (hmbs) (pre-uroporphyrinogen synthase) (pbg-d). [source:swissprot;acc:p08397]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4913.07\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5337.95\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08648\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1203\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
geranylgeranyl pyrophosphate synthetase (ggpp synthetase) (ggppsase) (geranylgeranyl diphosphate synthase) [includes: dimethylallyltransferase (ec 2.5.1.1); geranyltranstransferase (ec 2.5.1.10); farnesyltranstransferase (ec 2.5.1.29)]. [source:swissprot;acc:o95749]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4322.65\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4696.04\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08638\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1204\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
suppressor of cytokine signaling 1 (socs-1) (jak-binding protein) (jab) (stat induced stat inhibitor 1) (ssi-1) (tec-interacting protein 3) (tip-3). [source:swissprot;acc:o15524]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5946.33\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6459.79\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.08635\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1205\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
glia maturation factor gamma (gmf-gamma). [source:swissprot;acc:o60234]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1206\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
asc-1 complex subunit p100. [source:refseq;acc:nm\_032204]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1207\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
fk506-binding protein 1a (ec 5.2.1.8) (peptidyl-prolyl cis-trans isomerase) (ppiase) (rotamase) (12 kda fkbp) (fkbp-12) (immunophilin fkbp12). [source:swissprot;acc:p20071]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1208\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
meiotic recombination protein dmc1/lim15 homolog. [source:swissprot;acc:q14565]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5913.73\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6423.98\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08628\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1209\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
bifunctional aminoacyl-trna synthetase [includes: glutamyl-trna synthetase (ec 6.1.1.17) (glutamate--trna ligase); prolyl-trna synthetase (ec 6.1.1.15) (proline--trna ligase)]. [source:swissprot;acc:p07814]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5420.87\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5887.53\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08609\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1210\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
trimethyllysine dioxygenase, mitochondrial precursor (ec 1.14.11.8) (epsilon-trimethyllysine 2-oxoglutarate dioxygenase) (tml-alpha- ketoglutarate dioxygenase) (tml hydroxylase) (tml dioxygenase) (tmld). [source:swissprot;acc:q9nvh6]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
6410.73\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6962.22\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.08603\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1211\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
gtp-binding protein era homolog (hera) (fragment). [source:swissprot;acc:o75616]\vspace{3pt}}&&&\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/