Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Network Comparison Type Value Type Interaction Map Filtered green red network_comparison
Results: HTML CSV LaTeX Showing element 2013 to 2062 of 3730 in total 
Network Comparison Type: Divided
Value Type: Ranked
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.16666666666667\textwidth}
\def\wcB{0.16666666666667\textwidth}
\def\wcC{0.16666666666667\textwidth}
\def\wcD{0.16666666666667\textwidth}
\def\wcE{0.16666666666667\textwidth}
\begin{longtable}{|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1511\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytochrome c oxidase assembly protein cox11, mitochondrial precursor. [source:swissprot;acc:q9y6n1]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
209.509\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
213.268\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.01794\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1512\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
surfeit locus protein 1. [source:swissprot;acc:q15526]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1513\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
cox15 homolog isoform 2 precursor; cytochrome c oxidase subunit 15; cytochrome c oxidase assembly protein. [source:refseq;acc:nm\_004376]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1514\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
protoheme ix farnesyltransferase, mitochondrial precursor (ec 2.5.1.-) (heme o synthase). [source:swissprot;acc:q12887]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1515\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dipeptidylpeptidase 10; dipeptidyl peptidase iv-related protein 3. [source:refseq;acc:nm\_020868]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
209.511\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
213.267\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.01793\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1516\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dipeptidyl aminopeptidase-like protein 6 (dipeptidylpeptidase vi) (dipeptidylpeptidase 6) (dipeptidyl peptidase iv like protein) (dipeptidyl aminopeptidase-related protein) (dppx). [source:swissprot;acc:p42658]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1517\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
seprase (ec 3.4.21.-) (fibroblast activation protein alpha) (integral membrane serine protease) (170-kda melanoma membrane-bound gelatinase). [source:swissprot;acc:q12884]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1518\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial precursor (ec 2.7.1.115) (branched-chain alpha-ketoacid dehydrogenase kinase) (bckdhkin) (bckd-kinase). [source:swissprot;acc:o14874]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
209.524\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
213.259\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01783\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1519\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
cone-rod homeobox protein. [source:swissprot;acc:o43186]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
240.061\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
244.331\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01779\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1520\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein otx1. [source:swissprot;acc:p32242]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
240.098\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
244.367\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01778\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1521\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein otx2. [source:swissprot;acc:p32243]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
240.212\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
244.478\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01776\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1522\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
mannose-6-phosphate isomerase (ec 5.3.1.8) (phosphomannose isomerase) (pmi) (phosphohexomutase). [source:swissprot;acc:p34949]\vspace{3pt}}&\multirow{6}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
223.179\vspace{3pt}}}&\multirow{6}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
219.306\vspace{3pt}}}&\multirow{6}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.01766\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1523\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
putative ankyrin-repeat containing protein. [source:refseq;acc:nm\_025185]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1524\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
mln 64 protein (star-related lipid transfer protein 3) (stard3) (start domain-containing protein 3) (cab1 protein). [source:swissprot;acc:q14849]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1525\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
protocadherin fat 2 precursor (hfat2) (multiple epidermal growth factor-like domains 1). [source:swissprot;acc:q9nyq8]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1526\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
cadherin-related tumor suppressor homolog precursor (fat protein homolog). [source:swissprot;acc:q14517]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1527\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
mln64 n-terminal domain homolog (stard3 n-terminal like protein). [source:swissprot;acc:o95772]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1528\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
hepatocyte nuclear factor 3-gamma (hnf-3g) (forkhead box protein a3) (fork head-related protein fkh h3). [source:swissprot;acc:p55318]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
214.021\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.785\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01759\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1529\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
actin, cytoplasmic 2 (gamma-actin). [source:swissprot;acc:p02571]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
213.031\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
216.762\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01751\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1530\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
af-6 protein. [source:swissprot;acc:p55196]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
214.98\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.733\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01746\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1531\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
cysteine-rich motor neuron 1; cysteine-rich repeat-containing protein s52 precursor. [source:refseq;acc:nm\_016441]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
213.304\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.025\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01744\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1532\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
rna-binding protein 10 (rna binding motif protein 10) (dxs8237e). [source:swissprot;acc:p98175]\vspace{3pt}}&\multirow{8}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
232.376\vspace{3pt}}}&\multirow{8}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
228.419\vspace{3pt}}}&\multirow{8}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.01732\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1533\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytochrome c. [source:swissprot;acc:p00001]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1534\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
heparan sulfate 6-o-sulfotransferase 2. [source:refseq;acc:nm\_147174]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1535\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
heparan sulfate 6-o-sulfotransferase; heparan-sulfate 6-sulfotransferase. [source:refseq;acc:nm\_004807]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1536\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
fatty acid hydroxylase domain containing 1. [source:refseq;acc:nm\_024306]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1537\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ww domain binding protein 11; npw38-binding protein npwbp; sh3 domain-binding protein snp70. [source:refseq;acc:nm\_016312]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1538\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
elac homolog 2; putative prostate cancer susceptibility protein; elac (e. coli) homolog 2. [source:refseq;acc:nm\_018127]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1539\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
rna-binding protein 5 (rna binding motif protein 5) (putative tumor suppressor luca15) (g15 protein). [source:swissprot;acc:p52756]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1540\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
autophagy protein 5-like (apg5-like) (apoptosis-specific protein). [source:swissprot;acc:q9h1y0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
236.015\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
240.077\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01721\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1541\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
myb proto-oncogene protein (c-myb). [source:swissprot;acc:p10242]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
218.92\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
222.672\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01714\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1542\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
trimethyllysine dioxygenase, mitochondrial precursor (ec 1.14.11.8) (epsilon-trimethyllysine 2-oxoglutarate dioxygenase) (tml-alpha- ketoglutarate dioxygenase) (tml hydroxylase) (tml dioxygenase) (tmld). [source:swissprot;acc:q9nvh6]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
209.965\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
213.546\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.01706\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1543\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
gtp-binding protein era homolog (hera) (fragment). [source:swissprot;acc:o75616]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1544\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
orphan nuclear receptor nr2e1 (nuclear receptor tlx) (tailless homolog) (tll) (htll). [source:swissprot;acc:q9y466]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
216.081\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.762\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01704\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1545\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
orphan nuclear receptor tr2. [source:swissprot;acc:p13056]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
216.083\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.76\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01702\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1546\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
argininosuccinate synthase (ec 6.3.4.5) (citrulline--aspartate ligase). [source:swissprot;acc:p00966]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
221.474\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.769\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01701\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1547\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
myb-related protein b (b-myb). [source:swissprot;acc:p10244]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
218.823\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
222.541\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01699\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1548\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
myb-related protein a (a-myb). [source:swissprot;acc:p10243]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
218.802\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
222.512\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01696\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1549\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dynactin complex 50 kda subunit (50 kda dynein-associated polypeptide) (dynamitin) (dctn-50) (dynactin 2). [source:swissprot;acc:q13561]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
221.424\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
225.159\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.01687\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1550\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
adp,atp carrier protein, liver isoform t2 (adp/atp translocase 3) (adenine nucleotide translocator 3) (ant 3). [source:swissprot;acc:p12236]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1551\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
adp,atp carrier protein, heart/skeletal muscle isoform t1 (adp/atp translocase 1) (adenine nucleotide translocator 1) (ant 1). [source:swissprot;acc:p12235]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1552\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
adp,atp carrier protein, fibroblast isoform (adp/atp translocase 2) (adenine nucleotide translocator 2) (ant 2). [source:swissprot;acc:p05141]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1553\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
adenosylhomocysteinase (ec 3.3.1.1) (s-adenosyl-l-homocysteine hydrolase) (adohcyase). [source:swissprot;acc:p23526]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
211.833\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.389\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01679\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1554\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
c-terminal binding protein 1 (ctbp1). [source:swissprot;acc:q13363]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
193.018\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
196.215\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.01656\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
1555\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
pas domain containing serine/threonine kinase; pas-serine/threonine kinase. [source:refseq;acc:nm\_015148]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
192.996\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
196.192\vspace{3pt}}}&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1556\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
b-cell lymphoma 6 protein (bcl-6) (zinc finger protein 51) (laz-3 protein) (bcl-5). [source:swissprot;acc:p41182]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1557\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein slug (neural crest transcription factor slug) (snail homolog 2). [source:swissprot;acc:o43623]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1558\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
c-terminal binding protein 2 (ctbp2). [source:swissprot;acc:p56545]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
192.977\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
196.171\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.01655\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
1559\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
b-cell cll/lymphoma 6, member b (zinc finger protein); zinc finger protein 62. [source:refseq;acc:nm\_181844]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
192.996\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
196.191\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1560\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
p66 alpha. [source:refseq;acc:nm\_017660]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
170.455\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
167.687\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01651\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/