Scientific

MK5 Microarray Data


Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Filtered Value Type Gene Rank description green Interaction Map Network Comparison Type red network_comparison
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Value Type: Measured
\def\wcA{0.125\textwidth} \def\wcB{0.125\textwidth} \def\wcC{0.125\textwidth} \def\wcD{0.125\textwidth} \def\wcE{0.125\textwidth} \def\wcF{0.125\textwidth} \def\wcG{0.125\textwidth} \begin{longtable}{|c|c|c|c|c|c|c|} \hline \parbox{\wcA}{\vspace{3pt}\noindent Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent green\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Interaction Map\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent Network Comparison Type\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent red\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent network\_comparison\vspace{3pt}}\\ \hline \hline \multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 1\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent ba508n22.1 (hspc025) (fragment). [source:sptrembl;acc:q9hcw5]\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 6410\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 85\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent 6325\vspace{3pt}}}\\\cline{4-4} &&&\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}&&&\\\cline{2-7} &\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent mitochondrial 28s ribosomal protein s32 (s32mt) (mrp-s32) (ptd007) (hspc204). [source:swissprot;acc:q9y6g3]\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 0.00001\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 364\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent 36400000\vspace{3pt}}}\\\cline{4-4} &&&\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}&&&\\\cline{1-4}\cline{6-7} \multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 2\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent cab2. [source:refseq;acc:nm\_033419]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 174\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 0.00001\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent 17400000\vspace{3pt}}\\\cline{2-4}\cline{7-7} &\parbox{\wcB}{\vspace{3pt}\noindent homeobox protein hox-c4 (hox-3e) (cp19). [source:swissprot;acc:p09017]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 89\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}&&&\parbox{\wcG}{\vspace{3pt}\noindent 8900000\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent lipopolysaccharide-responsive and beige-like anchor protein (cdc4-like protein) (beige-like protein). [source:swissprot;acc:p50851]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6410\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent 85\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 6325\vspace{3pt}}\\\cline{2-4}\cline{6-7} &\parbox{\wcB}{\vspace{3pt}\noindent nuclear dna-binding protein; small unique nuclear receptor corepressor; c1d dna-binding protein. [source:refseq;acc:nm\_006333]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 19621.3\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent 23818.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 4196.8\vspace{3pt}}\\\cline{1-3}\cline{5-7} \multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 3\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent homeobox protein hox-c6 (hox-3c) (hho.c8) (cp25). [source:swissprot;acc:p09630]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 89\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 0.00001\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 8900000\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent nuclear dna-binding protein; small unique nuclear receptor corepressor; c1d dna-binding protein. [source:refseq;acc:nm\_006333]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 19621.3\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent 23818.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 4196.8\vspace{3pt}}\\\cline{2-4}\cline{6-7} &\parbox{\wcB}{\vspace{3pt}\noindent nucleoporin nup43 (p42). [source:swissprot;acc:q8nfh3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7500.75\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent 5106.93\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 2393.82\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent pyridoxine 5'-phosphate oxidase. [source:refseq;acc:nm\_018129]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 109\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 0.00001\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 10900000\vspace{3pt}}\\\hline \multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 4\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent anchor attachment protein 1; glycophosphatidylinositol anchor attachment 1; anchor attachment protein 1 (gaa1p, yeast) homolog. [source:refseq;acc:nm\_003801]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4356\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 2082\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 2274\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent homeobox protein hox-a4 (hox-1d) (hox-1.4). [source:swissprot;acc:q00056]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 89\vspace{3pt}}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 0.00001\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent 8900000\vspace{3pt}}}\\\cline{2-2}\cline{4-4} &\parbox{\wcB}{\vspace{3pt}\noindent homeobox protein hox-c4 (hox-3e) (cp19). [source:swissprot;acc:p09017]\vspace{3pt}}&&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}}&&&\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent small nuclear ribonucleoprotein e (snrnp-e) (sm protein e) (sm-e) (sme). [source:swissprot;acc:p08578]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 21730\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent 18704\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 3026\vspace{3pt}}\\\cline{1-3}\cline{6-7} \multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 5\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent histone h4. [source:swissprot;acc:p02304]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 24446.3\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent 21773.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 2673.2\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent homeobox protein hox-c6 (hox-3c) (hho.c8) (cp25). [source:swissprot;acc:p09630]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 89\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 0.00001\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent 8900000\vspace{3pt}}\\\cline{2-4}\cline{7-7} &\parbox{\wcB}{\vspace{3pt}\noindent jumonji protein. [source:swissprot;acc:q92833]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 17.5166\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}}&&&\parbox{\wcG}{\vspace{3pt}\noindent 1751660\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent lipopolysaccharide-responsive and beige-like anchor protein (cdc4-like protein) (beige-like protein). [source:swissprot;acc:p50851]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 2740.13\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 485.286\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 2254.84\vspace{3pt}}\\\hline \multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 6\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent homeobox protein hox-a4 (hox-1d) (hox-1.4). [source:swissprot;acc:q00056]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 89\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent 0.00001\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 8900000\vspace{3pt}}\\\cline{2-4}\cline{6-7} &\parbox{\wcB}{\vspace{3pt}\noindent homogentisate 1,2-dioxygenase (ec 1.13.11.5) (homogentisicase) (homogentisate oxygenase) (homogentisic acid oxidase). [source:swissprot;acc:q93099]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 0.00001\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent 13\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1300000\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent similar to zinc finger protein 277. [source:sptrembl;acc:q8wwa6]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent 8836.85\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent 7592.37\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1244.48\vspace{3pt}}\\\cline{3-4}\cline{6-7} &&\parbox{\wcC}{\vspace{3pt}\noindent 15605.1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent 13174.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 2430.4\vspace{3pt}}\\\cline{1-4}\cline{6-7} \multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 7\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent cysteine endopeptidase aut-like 2 isoform a; autophagy-related cysteine endopeptidase 2; autophagin 2. [source:refseq;acc:nm\_052936]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5898.71\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent 4660.09\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1238.62\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent sedlin. [source:swissprot;acc:o14582]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 43\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent 0.00001\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 4300000\vspace{3pt}}\\\cline{2-4}\cline{6-7} &\parbox{\wcB}{\vspace{3pt}\noindent tbc1 domain family, member 8 (with gram domain); vascular rab-gap/tbc-containing. [source:refseq;acc:nm\_007063]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent 2.31962\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 231962\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent zinc finger protein 277. [source:swissprot;acc:q9nrm2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 15605.1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 13174.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 2430.4\vspace{3pt}}\\\hline \multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 8\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent ba508n22.1 (hspc025) (fragment). [source:sptrembl;acc:q9hcw5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6410\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 85\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 75.4118\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent nucleoporin nup43 (p42). [source:swissprot;acc:q8nfh3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7500.75\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 5106.93\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 2393.82\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent synbindin (trs23 homolog) (hematopoietic stem/progenitor cell protein 172) (hspc172) (ptd009) (cgi-104). [source:swissprot;acc:q9y296]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 43\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 0.00001\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 4300000\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent zinc finger protein 277. [source:swissprot;acc:q9nrm2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 8770.72\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent 7537.89\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1232.83\vspace{3pt}}\\\cline{1-3}\cline{6-7} \multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 9\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent ataxin 2; olivopontocerebellar ataxia 2, autosomal dominant. [source:refseq;acc:nm\_002973]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent 11468.3\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent 10255.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1212.6\vspace{3pt}}\\\cline{3-4}\cline{6-7} &&\parbox{\wcC}{\vspace{3pt}\noindent 14756\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent 12478\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 2278\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent ba508n22.1 (hspc025) (fragment). [source:sptrembl;acc:q9hcw5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6410\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent 85\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 75.4118\vspace{3pt}}\\\cline{2-4}\cline{6-7} &\parbox{\wcB}{\vspace{3pt}\noindent ubiquitously transcribed y chromosome tetratricopeptide repeat protein (ubiquitously transcribed tpr protein on the y chromosome). [source:swissprot;acc:o14607]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 10.6048\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent 383.762\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 36.1876\vspace{3pt}}\\\cline{1-3}\cline{5-7} \multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 10\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent dj570f3.6 (novel protein similar to lysophospholipase ii (lypla2)). [source:sptrembl;acc:q9uge0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 2804\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 1593\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1211\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent lipopolysaccharide-responsive and beige-like anchor protein (cdc4-like protein) (beige-like protein). [source:swissprot;acc:p50851]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6410\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 85\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 75.4118\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent myosin va (myosin 5a) (dilute myosin heavy chain, non-muscle) (myosin heavy chain 12) (myoxin). [source:swissprot;acc:q9y4i1]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6193.07\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 7830.62\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1637.55\vspace{3pt}}\\\cline{2-7} &\parbox{\wcB}{\vspace{3pt}\noindent serpin b12. [source:swissprot;acc:q96p63]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5.56738\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 199.549\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 35.8425\vspace{3pt}}\\\hline \multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 11\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent cysteine endopeptidase aut-like 2 isoform a; autophagy-related cysteine endopeptidase 2; autophagin 2. [source:refseq;acc:nm\_052936]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7252.02\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent 5734.28\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1517.74\vspace{3pt}}\\\cline{2-4}\cline{6-7} &\parbox{\wcB}{\vspace{3pt}\noindent cysteine endopeptidase aut-like isoform b. [source:refseq;acc:nm\_178326]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5341.81\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent 4230.36\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1111.45\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent hurpin (hacat uv-repressible serpin) (protease inhibitor 13) (headpin) (serpin b13). [source:swissprot;acc:q9uiv8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5.71669\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent 199.249\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 34.8539\vspace{3pt}}\\\cline{2-4}\cline{6-7} &\parbox{\wcB}{\vspace{3pt}\noindent serpin b12. [source:swissprot;acc:q96p63]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5.56738\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent 199.549\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 35.8425\vspace{3pt}}\\\cline{1-3}\cline{5-7} \multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 12\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent cysteine endopeptidase aut-like isoform b. [source:refseq;acc:nm\_178326]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7099.51\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 5629.62\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1469.89\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent hurpin (hacat uv-repressible serpin) (protease inhibitor 13) (headpin) (serpin b13). [source:swissprot;acc:q9uiv8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5.71669\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent Divided\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent 199.249\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 34.8539\vspace{3pt}}\\\cline{2-4}\cline{6-7} &\parbox{\wcB}{\vspace{3pt}\noindent mln 64 protein (star-related lipid transfer protein 3) (stard3) (start domain-containing protein 3) (cab1 protein). [source:swissprot;acc:q14849]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 58\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent Low confidence\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent 859\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 14.8103\vspace{3pt}}\\\cline{2-3}\cline{5-7} &\parbox{\wcB}{\vspace{3pt}\noindent transcription initiation factor tfiid 135 kda subunit (tafii-135) (tafii135) (tafii-130) (tafii130). [source:swissprot;acc:o00268]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 30022.4\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent 31122\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent 1099.6\vspace{3pt}}\\\hline \multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent 13\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent adp-ribosylation factor gtpase-activating protein 3 (arf gap 3). [source:swissprot;acc:q9np61]\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 47\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent High confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent Divided\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent 1363\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent 29\vspace{3pt}}\\\cline{5-5}\cline{7-7} &&&&\parbox{\wcE}{\vspace{3pt}\noindent Subtracted\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent 1316\vspace{3pt}}\\\hline nd{longtable}
Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.

- http://analysis.yellowcouch.org/