Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene Value Type description Interaction Map Network Comparison Type Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 2680 to 2729 of 33156 in total 
Network Comparison Type: Divided
Filtered: 1

\def\wcA{0.125\textwidth}
\def\wcB{0.125\textwidth}
\def\wcC{0.125\textwidth}
\def\wcD{0.125\textwidth}
\def\wcE{0.125\textwidth}
\def\wcF{0.125\textwidth}
\def\wcG{0.125\textwidth}
\begin{longtable}{|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Interaction Map\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
335\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
clip-associating protein 1; drosophila 'multiple asters' (mast)-like homolog 1. [source:refseq;acc:nm\_015282]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
67.7167\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
71.2379\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.052\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
336\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
cgi-121 protein; prpk (p53-related protein kinase)-binding protein. [source:refseq;acc:nm\_016058]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
9142.34\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
9654.91\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05607\vspace{3pt}}\\\cline{3-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
dna polymerase epsilon p12 subunit (dna polymerase epsilon subunit 4). [source:swissprot;acc:q9nr33]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
3751.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4431.34\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.18128\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
cyclin-dependent kinase 2-associated protein 1 (cdk2-associated protein 1) (putative oral cancer suppressor) (deleted in oral cancer- 1) (doc-1). [source:swissprot;acc:o14519]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
312\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
284\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09859\vspace{3pt}}\\\cline{3-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
tuftelin-interacting protein 11 (hspc006). [source:swissprot;acc:q9ubb9]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
202.616\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
194.878\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.03971\vspace{3pt}}\\\cline{2-7}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
j kappa-recombination signal binding protein (rbp-j kappa). [source:swissprot;acc:q06330]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
46785.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
58383.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24789\vspace{3pt}}\\\cline{3-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
nude nuclear distribution gene e homolog like 1 (a. nidulans); lis1-interacting protein nudel; endooligopeptidase a. [source:refseq;acc:nm\_030808]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
48969.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
45455.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.07731\vspace{3pt}}\\\cline{2-7}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l11. [source:swissprot;acc:p39026]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.3167\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
45.4063\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10814\vspace{3pt}}\\\cline{3-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
max interacting protein 1 (mxi1 protein). [source:swissprot;acc:p50539]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
67.7178\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
71.2386\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05199\vspace{3pt}}\\\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
337\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein hox-c4 (hox-3e) (cp19). [source:swissprot;acc:p09017]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
20446.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
24136.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.18049\vspace{3pt}}\\\cline{3-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
mitochondrial gtp binding protein isoform v. [source:refseq;acc:nm\_032620]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9204.48\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
9720.58\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05607\vspace{3pt}}\\\cline{2-7}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l12. [source:swissprot;acc:p30050]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
243.583\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
267.527\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.0983\vspace{3pt}}\\\cline{3-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
serine/threonine-protein kinase kkialre (ec 2.7.1.-) (cyclin-dependent kinase-like 1). [source:swissprot;acc:q00532]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
201.873\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
194.181\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.03961\vspace{3pt}}\\\cline{2-7}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
human immunodeficiency virus type i enhancer binding protein 3. [source:refseq;acc:nm\_024503]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
46785.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
58383.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24789\vspace{3pt}}\\\cline{3-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
rna polymerase ii subunit 5-mediating protein (rpb5-mediating protein). [source:swissprot;acc:o94763]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
49748.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
46179.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.07729\vspace{3pt}}\\\cline{2-7}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
carboxypeptidase b precursor. [source:refseq;acc:nm\_020361]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
77.5801\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
70.0182\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.108\vspace{3pt}}\\\cline{3-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
max-interacting transcriptional repressor mad4 (max-associated protein 4) (max dimerization protein 4). [source:swissprot;acc:q14582]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
67.723\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
71.2422\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05196\vspace{3pt}}\\\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
338\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein hox-b4 (hox-2f) (hox-2.6). [source:swissprot;acc:p17483]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
20446.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
24136.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.18049\vspace{3pt}}\\\cline{3-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
ubiquitin-like protein sumo-1 conjugating enzyme (ec 6.3.2.19) (sumo- 1-protein ligase) (ubiquitin carrier protein) (ubiquitin-conjugating enzyme ubce2a) (p18). [source:swissprot;acc:p50550]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9229.69\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
9745\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05583\vspace{3pt}}\\\cline{2-7}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l12 like protein. [source:sptrembl;acc:o60886]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
243.583\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
267.528\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.0983\vspace{3pt}}\\\cline{3-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
spliceosomal u5 snrnp-specific 15 kda protein (dim1 protein homolog) (thioredoxin-like u5 snrnp protein u5-15kd). [source:swissprot;acc:o14834]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
202.572\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
194.86\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.03958\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
radial spokehead-like 2; radial spoke protein 3. [source:refseq;acc:nm\_031924]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
48506.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
45031.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.07717\vspace{3pt}}\\\cline{3-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
zinc finger protein 40 (human immunodeficiency virus type i enhancer- binding protein 1) (hiv-ep1) (major histocompatibility complex binding protein 1) (mbp-1) (positive regulatory domain ii binding factor 1) (prdii-bf1). [source:swissprot;acc:p15822]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
46785.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
58383.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24789\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
mast cell carboxypeptidase a precursor (ec 3.4.17.1) (mc-cpa) (carboxypeptidase a3). [source:swissprot;acc:p15088]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
77.58\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
70.0181\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.108\vspace{3pt}}\\\cline{3-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
max dimerization protein 3; likely ortholog of mouse max dimerization protein 3. [source:refseq;acc:nm\_031300]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
67.7254\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
71.2438\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05195\vspace{3pt}}\\\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
339\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein hox-c5 (hox-3d) (cp11). [source:swissprot;acc:q00444]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
20446.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
24136.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.18049\vspace{3pt}}\\\cline{3-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
isocitrate dehydrogenase [nadp], mitochondrial precursor (ec 1.1.1.42) (oxalosuccinate decarboxylase) (idh) (nadp+-specific icdh) (idp) (icd-m). [source:swissprot;acc:p48735]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9114.82\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
9621.71\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05561\vspace{3pt}}\\\cline{2-7}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
dj999l4.1 (novel protein similar to ribosomal protein l12 (rpl12)). [source:sptrembl;acc:q9nq02]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
243.583\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
267.527\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.0983\vspace{3pt}}\\\cline{3-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
geranylgeranyl pyrophosphate synthetase (ggpp synthetase) (ggppsase) (geranylgeranyl diphosphate synthase) [includes: dimethylallyltransferase (ec 2.5.1.1); geranyltranstransferase (ec 2.5.1.10); farnesyltranstransferase (ec 2.5.1.29)]. [source:swissprot;acc:o95749]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
209.518\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
201.554\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.03951\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
ecotropic virus integration 1 site protein. [source:swissprot;acc:q03112]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
53275.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
49485.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.07658\vspace{3pt}}\\\cline{3-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
human immunodeficiency virus type i enhancer-binding protein 2 (hiv-ep2). [source:swissprot;acc:p31629]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
46785.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
58383.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24789\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
plasma carboxypeptidase b2 isoform a preproprotein; carboxypeptidase u; thrombin-activatable fibrinolysis inhibitor; carboxypeptidase b-like protein; thrombin-activable fibrinolysis inhibitor. [source:refseq;acc:nm\_001872]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
77.5797\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
70.0179\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.108\vspace{3pt}}\\\cline{3-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
small nuclear ribonucleoprotein e (snrnp-e) (sm protein e) (sm-e) (sme). [source:swissprot;acc:p08578]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71.5541\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
75.2665\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05188\vspace{3pt}}\\\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
340\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein hox-c6 (hox-3c) (hho.c8) (cp25). [source:swissprot;acc:p09630]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
20446.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
24136.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.18049\vspace{3pt}}\\\cline{3-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
tetranectin precursor (tn) (plasminogen-kringle 4 binding protein). [source:swissprot;acc:p05452]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
8940.43\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
9437.54\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.0556\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
blocked early in transport 1 homolog (s. cerevisiae) like; golgi snare 15 kda protein. [source:refseq;acc:nm\_016526]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
201.827\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
194.178\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.03939\vspace{3pt}}\\\cline{3-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
myelin gene expression factor 2. [source:refseq;acc:nm\_016132]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
235.383\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
258.476\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09811\vspace{3pt}}\\\cline{2-7}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
nascent-polypeptide-associated complex alpha polypeptide. [source:refseq;acc:nm\_005594]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50915\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
47306.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.07628\vspace{3pt}}\\\cline{3-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
ribonucleotide reductase m2 b (tp53 inducible); p53-inducible ribonucleotide reductase small subunit 2 homolog. [source:refseq;acc:nm\_015713]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
32117\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
40054\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24713\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
nuclear matrix protein nmp200 related to splicing factor prp19. [source:refseq;acc:nm\_014502]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
58.4926\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
64.8047\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10791\vspace{3pt}}\\\cline{3-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
rabaptin, rab gtpase binding effector protein 1; rabaptin-5; neurocrescin. [source:refseq;acc:nm\_004703]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71.2599\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
74.9558\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05187\vspace{3pt}}\\\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
341\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein hox-d4 (hox-4b) (hox-5.1) (hho.c13). [source:swissprot;acc:p09016]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
20446.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
24136.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.18049\vspace{3pt}}\\\cline{3-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
rho guanine nucleotide exchange factor 7 (pak-interacting exchange factor beta) (beta-pix) (cool-1) (p85). [source:swissprot;acc:q14155]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7151\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
7548.35\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05557\vspace{3pt}}\\\cline{2-7}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l9. [source:swissprot;acc:p32969]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
240.243\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
263.798\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09805\vspace{3pt}}\\\cline{3-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
kv channel interacting protein 1; vesicle apc-binding protein; a-type potassium channel modulatory protein 1. [source:refseq;acc:nm\_014592]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
214.027\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
222.415\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.03919\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
alpha-nac protein. [source:sptrembl;acc:q9h009]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
50910.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
47302.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.07627\vspace{3pt}}\\\cline{3-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
ribonucleoside-diphosphate reductase m1 chain (ec 1.17.4.1) (ribonucleotide reductase large chain). [source:swissprot;acc:p23921]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
32056.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
39965.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24673\vspace{3pt}}\\\cline{2-7}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
blocked early in transport 1 homolog (s. cerevisiae) like; golgi snare 15 kda protein. [source:refseq;acc:nm\_016526]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
72.4676\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
76.2225\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05181\vspace{3pt}}\\\cline{3-7}
&&\parbox{\wcC}{\vspace{3pt}\noindent
lupus la protein (sjogren syndrome type b antigen) (ss-b) (la ribonucleoprotein) (la autoantigen). [source:swissprot;acc:p05455]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
51.9812\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
57.5858\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10782\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\parbox{\wcA}{\vspace{3pt}\noindent
342\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein hox-b5 (hox-2a) (hho.c10) (hu-1). [source:swissprot;acc:p09067]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
20446.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
24136.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.18049\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/