Scientific
MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis
These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.
MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.
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Rank Gene Hugo description Network Comparison Type Value Type Interaction Map Filtered red network_comparison green
Results: HTML CSV LaTeX
Showing element 1 to 50 of 33156 in total
Network Comparison Type: Divided
Filtered: 1

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\def\wcB{0.11111111111111\textwidth}
\def\wcC{0.11111111111111\textwidth}
\def\wcD{0.11111111111111\textwidth}
\def\wcE{0.11111111111111\textwidth}
\def\wcF{0.11111111111111\textwidth}
\def\wcG{0.11111111111111\textwidth}
\def\wcH{0.11111111111111\textwidth}
\begin{longtable}{|c|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Interaction Map\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
green\vspace{3pt}}\\
\hline
\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
CPD\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
carboxypeptidase d precursor (ec 3.4.17.-) (gp180). [source:swissprot;acc:o75976]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
16\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
32\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
LAMP1\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
lysosome-associated membrane glycoprotein 1 precursor (lamp-1) (cd107a antigen). [source:swissprot;acc:p11279]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
2399.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
4.4149\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
543.5\vspace{3pt}}\\\cline{4-4}\cline{6-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
1362.75\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19.4914\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
69.9153\vspace{3pt}}\\\cline{4-4}\cline{6-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
48.9847\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2.10117\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
23.3131\vspace{3pt}}\\\cline{2-8}
&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
RINT1\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
rad50-interacting protein 1. [source:refseq;acc:nm\_021930]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
450.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
5.31521\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2394.5\vspace{3pt}}\\\cline{4-4}\cline{6-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
48.0356\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
28.2513\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1357.07\vspace{3pt}}\\\cline{4-4}\cline{6-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
21.225\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2.30547\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
48.9336\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
UBAC1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
putative glialblastoma cell differentiation-related; putative glialblastoma cell differentiation-related protein. [source:refseq;acc:nm\_016172]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
10\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2.4\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
24\vspace{3pt}}\\\cline{1-3}\cline{6-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
2\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mannosyl-oligosaccharide 1,2-alpha-mannosidase ib (ec 3.2.1.113) (processing alpha-1,2-mannosidase ib) (alpha-1,2-mannosidase ib) (mannosidase alpha class 1a member 2). [source:swissprot;acc:o60476]\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
15\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.86667\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
28\vspace{3pt}}\\\cline{2-8}
&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
CDK4\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
cell division protein kinase 4 (ec 2.7.1.37) (cyclin-dependent kinase 4) (psk-j3). [source:swissprot;acc:p11802]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
2399.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
4.4149\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
543.5\vspace{3pt}}\\\cline{4-4}\cline{6-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
1362.75\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19.4914\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
69.9153\vspace{3pt}}\\\cline{4-4}\cline{6-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
48.9847\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2.10117\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
23.3131\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
LAMP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
lysosome-associated membrane glycoprotein 1 precursor (lamp-1) (cd107a antigen). [source:swissprot;acc:p11279]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
223\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.47982\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
330\vspace{3pt}}\\\cline{2-8}
&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
RHOBTB2\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
rho-related btb domain-containing protein 2 (deleted in breast cancer 2 gene protein) (p83). [source:swissprot;acc:q9byz6]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
450.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
5.31521\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2394.5\vspace{3pt}}\\\cline{4-4}\cline{6-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
48.0356\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
28.2513\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1357.07\vspace{3pt}}\\\cline{4-4}\cline{6-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
21.225\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2.30547\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
48.9336\vspace{3pt}}\\\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
3\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
CDK4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cell division protein kinase 4 (ec 2.7.1.37) (cyclin-dependent kinase 4) (psk-j3). [source:swissprot;acc:p11802]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
223\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.47982\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
330\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
CDK6\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
cell division protein kinase 6 (ec 2.7.1.37) (serine/threonine protein kinase plstire). [source:swissprot;acc:q00534]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
2399.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
4.4149\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
543.5\vspace{3pt}}\\\cline{4-4}\cline{6-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
1362.75\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19.4914\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
69.9153\vspace{3pt}}\\\cline{4-4}\cline{6-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
48.9847\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2.10117\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
23.3131\vspace{3pt}}\\\cline{2-8}
&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
HLX\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein hlx1 (homeobox protein hb24). [source:swissprot;acc:q14774]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
2597.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
3.71868\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
698.5\vspace{3pt}}\\\cline{4-4}\cline{6-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
1596.92\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
13.8285\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
115.48\vspace{3pt}}\\\cline{4-4}\cline{6-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
50.9657\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.92839\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
26.4292\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PSCD1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytohesin 1 (sec7 homolog b2-1). [source:swissprot;acc:q15438]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
15\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.86667\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
28\vspace{3pt}}\\\cline{1-3}\cline{5-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
4\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
CDK6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cell division protein kinase 6 (ec 2.7.1.37) (serine/threonine protein kinase plstire). [source:swissprot;acc:q00534]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
223\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.47982\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
330\vspace{3pt}}\\\cline{2-8}
&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
HBS1L\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
hbs1-like. [source:refseq;acc:nm\_006620]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
2597.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
3.71868\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
698.5\vspace{3pt}}\\\cline{4-4}\cline{6-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
1596.92\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
13.8285\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
115.48\vspace{3pt}}\\\cline{4-4}\cline{6-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
50.9657\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.92839\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
26.4292\vspace{3pt}}\\\cline{2-8}
&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
LAMP2\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
lysosome-associated membrane glycoprotein 2 precursor (lamp-2) (cd107b antigen). [source:swissprot;acc:p13473]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
2399.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
4.4149\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
543.5\vspace{3pt}}\\\cline{4-4}\cline{6-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
1362.75\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19.4914\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
69.9153\vspace{3pt}}\\\cline{4-4}\cline{6-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
48.9847\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2.10117\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
23.3131\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PSCD2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytohesin 2 (arf nucleotide-binding site opener) (arno protein) (arf exchange factor). [source:swissprot;acc:q99418]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
15\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.86667\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
28\vspace{3pt}}\\\cline{1-4}\cline{6-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
5\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
JPH3\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
junctophilin 3 (junctophilin type 3) (jp-3). [source:swissprot;acc:q8wxh2]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
1153.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
3.39764\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
339.5\vspace{3pt}}\\\cline{4-4}\cline{6-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
314.926\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
11.544\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
27.2805\vspace{3pt}}\\\cline{4-4}\cline{6-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
33.9632\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.84327\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
18.4255\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
LAMP2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
lysosome-associated membrane glycoprotein 2 precursor (lamp-2) (cd107b antigen). [source:swissprot;acc:p13473]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
223\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.47982\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
330\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
OSBPL6\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
oxysterol binding protein-related protein 6 (osbp-related protein 6) (orp-6). [source:swissprot;acc:q9bzf3]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
736.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2.86965\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2113.5\vspace{3pt}}\\\cline{4-4}\cline{6-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
128.386\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8.23493\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1057.25\vspace{3pt}}\\\cline{4-4}\cline{6-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
27.1385\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.69401\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
45.9728\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PSCD4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytohesin 4. [source:swissprot;acc:q9uia0]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
15\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.86667\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
28\vspace{3pt}}\\\cline{1-4}\cline{6-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
6\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
JPH2\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
junctophilin 2 (junctophilin type 2) (jp-2). [source:swissprot;acc:q9br39]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
1153.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
3.39764\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
339.5\vspace{3pt}}\\\cline{4-4}\cline{6-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
314.926\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
11.544\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
27.2805\vspace{3pt}}\\\cline{4-4}\cline{6-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
33.9632\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.84327\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
18.4255\vspace{3pt}}\\\cline{2-8}
&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
OSBPL3\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
oxysterol binding protein-related protein 3 (osbp-related protein 3) (orp-3). [source:swissprot;acc:q9h4l5]\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
736.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2.86965\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2113.5\vspace{3pt}}\\\cline{4-4}\cline{6-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
128.386\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8.23493\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1057.25\vspace{3pt}}\\\cline{4-4}\cline{6-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
27.1385\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.69401\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
45.9728\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
OSBPL6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
oxysterol binding protein-related protein 6 (osbp-related protein 6) (orp-6). [source:swissprot;acc:q9bzf3]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
318\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.325\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
240\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PSCD3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytohesin 3 (arf nucleotide-binding site opener 3) (arno3 protein) (general receptor of phosphoinositides 1) (grp1). [source:swissprot;acc:o43739]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
15\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.86667\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
28\vspace{3pt}}\\\cline{1-3}\cline{6-8}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
7\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
HLX\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein hlx1 (homeobox protein hb24). [source:swissprot;acc:q14774]\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
215\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.49767\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
322\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
OSBPL3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
oxysterol binding protein-related protein 3 (osbp-related protein 3) (orp-3). [source:swissprot;acc:q9h4l5]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
318\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.325\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
240\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Hugo is the HGNC identifier if it exists

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/