Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red network_comparison green
Results: HTML CSV LaTeX Showing element 1 to 50 of 66312 in total 
Filtered: 1

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\def\wcB{0.11111111111111\textwidth}
\def\wcC{0.11111111111111\textwidth}
\def\wcD{0.11111111111111\textwidth}
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\def\wcF{0.11111111111111\textwidth}
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\begin{longtable}{|c|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Network Comparison Type\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Interaction Map\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
green\vspace{3pt}}\\
\hline
\hline
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
carboxypeptidase d precursor (ec 3.4.17.-) (gp180). [source:swissprot;acc:o75976]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
40899\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8870.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
32028.5\vspace{3pt}}\\\cline{3-4}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
16\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
32\vspace{3pt}}\\\cline{3-4}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
395912\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
153113\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
242799\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hlx1 (homeobox protein hb24). [source:swissprot;acc:q14774]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
215\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
107\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
322\vspace{3pt}}\\\cline{2-8}
&\multirow{5}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
lysosome-associated membrane glycoprotein 1 precursor (lamp-1) (cd107a antigen). [source:swissprot;acc:p11279]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
2399.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
4.4149\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
543.5\vspace{3pt}}\\\cline{3-4}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
223\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
107\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
330\vspace{3pt}}\\\cline{3-4}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
1362.75\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19.4914\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
69.9153\vspace{3pt}}\\\cline{3-3}\cline{6-8}
&&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
48.9847\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
2.10117\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcH}{\vspace{3pt}\noindent
23.3131\vspace{3pt}}}\\\cline{4-4}\cline{7-7}
&&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
25.6716\vspace{3pt}}&\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
mannosyl-oligosaccharide 1,2-alpha-mannosidase ib (ec 3.2.1.113) (processing alpha-1,2-mannosidase ib) (alpha-1,2-mannosidase ib) (mannosidase alpha class 1a member 2). [source:swissprot;acc:o60476]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\multirow{7}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
41482.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8126\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
33356.5\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
putative glialblastoma cell differentiation-related; putative glialblastoma cell differentiation-related protein. [source:refseq;acc:nm\_016172]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
10\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
2.4\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
24\vspace{3pt}}\\\cline{3-4}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
468498\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
145743\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
322755\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
rad50-interacting protein 1. [source:refseq;acc:nm\_021930]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
450.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
5.31521\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2394.5\vspace{3pt}}\\\cline{3-3}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
48.0356\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
28.2513\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1357.07\vspace{3pt}}\\\cline{3-3}\cline{6-8}
&&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
21.225\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
2.30547\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcH}{\vspace{3pt}\noindent
48.9336\vspace{3pt}}}\\\cline{4-4}\cline{7-7}
&&&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
27.7086\vspace{3pt}}&\\\cline{1-3}\cline{5-8}
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
2\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
28s ribosomal protein s17, mitochondrial precursor (mrp-s17) (hspc011). [source:swissprot;acc:q9y2r5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\multirow{7}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
21185\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
7307\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
28492\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
bestrophin (vitelliform macular dystrophy protein) (tu15b). [source:swissprot;acc:o76090]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
333556\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
141563\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
475119\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\multirow{5}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
cell division protein kinase 4 (ec 2.7.1.37) (cyclin-dependent kinase 4) (psk-j3). [source:swissprot;acc:p11802]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
2399.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
4.4149\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
543.5\vspace{3pt}}\\\cline{3-4}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
223\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
107\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
330\vspace{3pt}}\\\cline{3-4}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
1362.75\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19.4914\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
69.9153\vspace{3pt}}\\\cline{3-3}\cline{6-8}
&&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
48.9847\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
2.10117\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcH}{\vspace{3pt}\noindent
23.3131\vspace{3pt}}}\\\cline{4-4}\cline{7-7}
&&&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
25.6716\vspace{3pt}}&\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
cytohesin 1 (sec7 homolog b2-1). [source:swissprot;acc:q15438]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
41482.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8126\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
33356.5\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
hbs1-like. [source:refseq;acc:nm\_006620]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
215\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
107\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
322\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
lysosome-associated membrane glycoprotein 1 precursor (lamp-1) (cd107a antigen). [source:swissprot;acc:p11279]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
223\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.47982\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
330\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
mannosyl-oligosaccharide 1,2-alpha-mannosidase ib (ec 3.2.1.113) (processing alpha-1,2-mannosidase ib) (alpha-1,2-mannosidase ib) (mannosidase alpha class 1a member 2). [source:swissprot;acc:o60476]\vspace{3pt}}}&&&\multirow{6}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
15\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.86667\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
28\vspace{3pt}}\\\cline{3-4}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
407289\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
143938\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
263351\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
rho-related btb domain-containing protein 2 (deleted in breast cancer 2 gene protein) (p83). [source:swissprot;acc:q9byz6]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
450.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
5.31521\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2394.5\vspace{3pt}}\\\cline{3-3}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
48.0356\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
28.2513\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1357.07\vspace{3pt}}\\\cline{3-3}\cline{6-8}
&&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
21.225\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
2.30547\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcH}{\vspace{3pt}\noindent
48.9336\vspace{3pt}}}\\\cline{4-4}\cline{7-7}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
27.7086\vspace{3pt}}&\\\hline
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
3\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cell division protein kinase 4 (ec 2.7.1.37) (cyclin-dependent kinase 4) (psk-j3). [source:swissprot;acc:p11802]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\multirow{6}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
223\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.47982\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
330\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\multirow{5}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
cell division protein kinase 6 (ec 2.7.1.37) (serine/threonine protein kinase plstire). [source:swissprot;acc:q00534]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
2399.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
4.4149\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
543.5\vspace{3pt}}\\\cline{3-4}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
223\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
107\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
330\vspace{3pt}}\\\cline{3-4}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
1362.75\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19.4914\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
69.9153\vspace{3pt}}\\\cline{3-3}\cline{6-8}
&&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
48.9847\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
2.10117\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcH}{\vspace{3pt}\noindent
23.3131\vspace{3pt}}}\\\cline{4-4}\cline{7-7}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
25.6716\vspace{3pt}}&\\\cline{2-8}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
cytohesin 1 (sec7 homolog b2-1). [source:swissprot;acc:q15438]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\multirow{7}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
15\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.86667\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
28\vspace{3pt}}\\\cline{3-4}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
407289\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
143938\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
263351\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
cytohesin 2 (arf nucleotide-binding site opener) (arno protein) (arf exchange factor). [source:swissprot;acc:q99418]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
41482.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8126\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
33356.5\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-8}
&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hlx1 (homeobox protein hb24). [source:swissprot;acc:q14774]\vspace{3pt}}}&&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
2597.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
3.71868\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
698.5\vspace{3pt}}\\\cline{3-3}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
1596.92\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
13.8285\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
115.48\vspace{3pt}}\\\cline{3-3}\cline{6-8}
&&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
50.9657\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.92839\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcH}{\vspace{3pt}\noindent
26.4292\vspace{3pt}}}\\\cline{4-4}\cline{7-7}
&&&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
24.5365\vspace{3pt}}&\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial solute carrier protein. [source:refseq;acc:nm\_145305]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
21185\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
7307\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
28492\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
rad50-interacting protein 1. [source:refseq;acc:nm\_021930]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
337\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
105\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
232\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
vitelliform macular dystrophy 2-like protein 2. [source:refseq;acc:nm\_153274]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
333506\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
141539\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
475045\vspace{3pt}}\\\cline{1-3}\cline{6-8}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
4\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
bestrophin (vitelliform macular dystrophy protein) (tu15b). [source:swissprot;acc:o76090]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
36474.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
7035.1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
43509.4\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
cell division protein kinase 6 (ec 2.7.1.37) (serine/threonine protein kinase plstire). [source:swissprot;acc:q00534]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
223\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.47982\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
330\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/